| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,904,347 – 14,904,448 |
| Length | 101 |
| Max. P | 0.816631 |
| Location | 14,904,347 – 14,904,448 |
|---|---|
| Length | 101 |
| Sequences | 10 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 65.47 |
| Shannon entropy | 0.67162 |
| G+C content | 0.39355 |
| Mean single sequence MFE | -22.77 |
| Consensus MFE | -7.94 |
| Energy contribution | -8.90 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.816631 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2L 14904347 101 - 23011544 ----------UUUUUUAUGCCGUUCUCCGCUUUUCCGUGCGU-CGCUCAACGCAACAAUUUAUGGCUAAGCGCGCUUGUGUUUGGCCUAAACGAAUAAACGUAUAUAUGUAU---- ----------.....(((((.((((............(((((-......)))))....((((.((((((((((....)))))))))))))).))))....))))).......---- ( -24.10, z-score = -0.72, R) >droSim1.chr2L 14654552 100 - 22036055 -----------UUUUUAUGCCGUUCUUCGCUUUUCCGUGCGU-CGCUCAACGCAACAAUUUAUGGCUAAGCGCGCUUGUGUUUGGCCUAAAAGUAUAAACGUAUAUUUAUAU---- -----------....(((((.(((..(.((((((...(((((-......))))).........((((((((((....)))))))))).)))))))..)))))))).......---- ( -26.20, z-score = -1.92, R) >droSec1.super_3 1174183 102 - 7220098 ---------UUUUUUUAUGCCGUUCUUCGCUUUUCCGUGCGU-CGCUCAACGCAACAAUUUAUGGCUAAGCGCGCUUGUGUUUUGCCUUAAAGUAUAAACGUAUAUUUUUAU---- ---------....(((((((.................(((((-......)))))....((((.(((.((((((....)))))).))).))))))))))).............---- ( -21.30, z-score = -0.82, R) >droYak2.chr2L 15007346 94 - 22324452 -----------UUUUUAUGCCGCUCUCCGCUUUUCCGUGCGU-CGCUCAACGCAACAAUUUAUGGCUAA--GCGCUUGUGUUUGGCCUAAAAGUAUGAGCGUAUAUAU-------- -----------....(((((.((((...((((((...(((((-......))))).........((((((--(((....))))))))).))))))..)))))))))...-------- ( -30.60, z-score = -3.07, R) >droEre2.scaffold_4929 6647601 103 - 26641161 ----------UUUUUCAUGCCGUUCUCCGCUUUUCCGUGCGU-CGCUCAACGCAACAAUUUAUGGCUAA--GCGCUUGCGUUUGGCCUAAAAGUAGAAACGUAUAUAUGUCCAUAU ----------......((((.(((.((..(((((...(((((-......))))).........((((((--(((....))))))))).)))))..)))))))))............ ( -27.80, z-score = -2.23, R) >droAna3.scaffold_12916 15235591 101 + 16180835 ------UUUUAUUUCCUUUUCCCGGCUCCUUUUUACGUACGU-CGCUCAACGCAACAAUUUAUGGCUAA--GCGCCCGUG-UUGGCCUAAAAAUAUAUACAUAUAU-UGUGG---- ------...............((((((......((((...((-.((.....)).)).......(((...--..)))))))-..))))....((((((....)))))-)..))---- ( -14.40, z-score = 1.02, R) >dp4.chr4_group1 2508826 96 + 5278887 UUUUUUUUUAUAUAUGCCUUUCUCCUUUUCC-----GUGCGU-CGCUCAACGCAACAAUUUAUGGCUAA--GCGCUCGUGUUUGGCCUAAAAAUAUAUAUAUGU------------ ........((((((((...............-----.(((((-......)))))....((((.((((((--(((....)))))))))))))..))))))))...------------ ( -22.70, z-score = -3.14, R) >droPer1.super_5 2439094 93 - 6813705 ---UUUUUUAUAUAUGCCUUUCUCCUUUUCC-----GUGCGU-CGCUCAACGCAACAAUUUAUGGCUAA--GCGCUCGUGUUUGGCCUAAAAAUAUAUAUAUGU------------ ---.....((((((((...............-----.(((((-......)))))....((((.((((((--(((....)))))))))))))..))))))))...------------ ( -22.70, z-score = -3.12, R) >droWil1.scaffold_180764 3396859 79 - 3949147 -----------UUUUUUUUUUGUCGCCUGUU-----AUGCGU-CGCCCGACGCAACAAUUUAUGGGUAA--AUGUUCGUG-UUGGCCU-AAAAUAUAUAU---------------- -----------......(((((..((((((.-----.(((((-(....)))))))))...((((..(..--..)..))))-..))).)-)))).......---------------- ( -16.50, z-score = -0.60, R) >droMoj3.scaffold_6500 23699830 82 + 32352404 ------------------------------UUUUAUAUACAUAUGCUGGCCAAAACAAUUUAUGGCUAA--GCGCGCAAG-UUGCCCUAAAAAUGUAUAUAUGUAUGUAUAUAUG- ------------------------------...(((((((((((((((((((..........))))).)--))((....)-)....................)))))))))))..- ( -21.40, z-score = -1.81, R) >consensus __________UUUUUUAUGCCGUUCUUCGCUUUUCCGUGCGU_CGCUCAACGCAACAAUUUAUGGCUAA__GCGCUCGUGUUUGGCCUAAAAAUAUAAACGUAUAU_U_U______ .....................................(((((.......)))))....((((.((((((..((....))..))))))))))......................... ( -7.94 = -8.90 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:47 2011