| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,860,872 – 14,860,980 |
| Length | 108 |
| Max. P | 0.690639 |
| Location | 14,860,872 – 14,860,980 |
|---|---|
| Length | 108 |
| Sequences | 8 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.86 |
| Shannon entropy | 0.32441 |
| G+C content | 0.44508 |
| Mean single sequence MFE | -32.20 |
| Consensus MFE | -20.40 |
| Energy contribution | -19.95 |
| Covariance contribution | -0.45 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.690639 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14860872 108 + 23011544 CGCCCGAAAUUAAAGCCAAAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAAGCCGAAAGCCAUGGAAUAUU-UGCACACACUUGCCUU-CGCAAGGGCGAG--UGUUACAG- ....((((((....(((...)))))))))(-------(((((((...((((((((....))))))...))....)))))-)))..((((((((((.-.....)))))))--))).....- ( -34.00, z-score = -2.24, R) >droSim1.chr2L 14610129 109 + 22036055 CGCCCGAAAUUAAAGCCAAAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAACCCGAAAGCCAUGGAAUAUU-UGCACACACUUGCCUU-CGAACGGGCGAAC-UGUUACAG- ((((((.........(((..(((.((((((-------.......(((((......)))))))))))))).)))......-.(((......)))...-....))))))...-........- ( -30.01, z-score = -1.54, R) >droSec1.super_3 1133154 109 + 7220098 CGCCCGAAAUUAAAGCCAAAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAAGCCGAAAGCCAUGGAAUAUU-UGCACACACUUGCCUU-CGAACGGGCGAAC-UGUUACAG- ((((((.........(((..(((.((((((-------(.......((((......)))))))))))))).)))......-.(((......)))...-....))))))...-........- ( -30.71, z-score = -1.48, R) >droYak2.chr2L 14965768 115 + 22324452 CGCCCGAAAUUAAAGCCAAAGGCAUUUCGGAUUUCGGCAAAUAUGUUUGUUUGGUCAAAGCCGAAAGCCAUGGCAUAUU-UGCACACACUUGCCUU-CGAACGGGCGAG--UGUAACAG- ...(((((((....(((...))))))))))......(((((((((((..((((((....))))))......))))))))-)))..((((((((((.-.....)))))))--))).....- ( -42.30, z-score = -3.97, R) >droEre2.scaffold_4929 6605719 108 + 26641161 CGCCCGAAAUUAAAGCCAGAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAAGCCGAAAGCCAUGGAAUAUU-UGCACACACUUGCCUU-CGUACGGGCGAU--UGUAACAG- ((((((.........(((..(((.((((((-------(.......((((......)))))))))))))).)))......-.(((......)))...-....))))))..--........- ( -32.11, z-score = -1.87, R) >droAna3.scaffold_12916 15190047 108 - 16180835 CUUUCGAAAUUAAAGGCGAAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAUGCCGAAAGCCAUAGAAUAUU-UGUUCACUUUUGUACU-UGUGCGUGUGACU-UGU-GCAG- ..............(((...((((((..(.-------((((((....)))))).).))))))....)))...((((...-.)))).....(((((.-.((.......)).-.))-))).- ( -25.50, z-score = -0.34, R) >dp4.chr4_group1 2433768 113 - 5278887 CUUUCGAAAUUAAAGCCAAAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAAGCUGAAAGCCAUGCUAUCUCGUACUAGUAUUUGCCCUGUGCGUUGGCGAUAGUGUCACAGU .....((.((((..(((((..((((...((-------(((((((((.((..(((.((..((.....))..)))))...)).))..)))))))))..)))).)))))..)))).))..... ( -31.50, z-score = -1.69, R) >droPer1.super_5 2370232 113 + 6813705 CUUUCGAAAUUAAAGCCAAAGGCAUUUCGG-------CAAAUAUGUUUGUUUGGUCAAAGCUGAAAGCCAUGCUAUCUCGUACUAGUAUUUGCCCUGUGCGUUGGCGAUAGUGUCACAGU .....((.((((..(((((..((((...((-------(((((((((.((..(((.((..((.....))..)))))...)).))..)))))))))..)))).)))))..)))).))..... ( -31.50, z-score = -1.69, R) >consensus CGCCCGAAAUUAAAGCCAAAGGCAUUUCGG_______CAAAUAUGUUUGUUUGGUCAAAGCCGAAAGCCAUGGAAUAUU_UGCACACACUUGCCUU_CGAACGGGCGAU__UGUUACAG_ ....................(((.((((((.......((((((....)))))).......)))))))))....................((((((.......))))))............ (-20.40 = -19.95 + -0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:39 2011