| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,810,584 – 14,810,642 |
| Length | 58 |
| Max. P | 0.634863 |
| Location | 14,810,584 – 14,810,642 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 95.52 |
| Shannon entropy | 0.07512 |
| G+C content | 0.48276 |
| Mean single sequence MFE | -13.22 |
| Consensus MFE | -12.52 |
| Energy contribution | -13.12 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.634863 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14810584 58 - 23011544 AAUCCUUUUAAAGCAUCACCGUCAUCACUGACAAACGGUUGGCACGUGCCCGAUGCAU ............((((((((((............))))).(((....))).))))).. ( -15.50, z-score = -2.14, R) >droSim1.chr2L 14558401 58 - 22036055 AAUCCUUUUAAAGCAUCACCGUCAUCACUGACAAACGGUUGGCACGUGCCCGAUGCAU ............((((((((((............))))).(((....))).))))).. ( -15.50, z-score = -2.14, R) >droSec1.super_3 1082605 58 - 7220098 AAUCCUUUUAAAGCAUCACCGUCAUCACUGACAAACGGUUGGCACGUGCCCGAUGCAU ............((((((((((............))))).(((....))).))))).. ( -15.50, z-score = -2.14, R) >droYak2.chr2L 14913405 58 - 22324452 AAUCCUUUUAAAGCUUCACCGUCAUCGCUGCAAAACGUUUGGCACGUGCCCGAUGCAU ....................(.(((((..((...((((.....)))))).)))))).. ( -8.40, z-score = 0.78, R) >droEre2.scaffold_4929 6552832 58 - 26641161 AAUCCUUUUAAAGCUUCACCGUCAUCACUGCAAAACGGUUGGCACGUGCCCGAUGCAU ............((.(((((((............))))).(((....))).)).)).. ( -11.20, z-score = -0.35, R) >consensus AAUCCUUUUAAAGCAUCACCGUCAUCACUGACAAACGGUUGGCACGUGCCCGAUGCAU ............((((((((((............))))).(((....))).))))).. (-12.52 = -13.12 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:36 2011