| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,792,346 – 14,792,497 |
| Length | 151 |
| Max. P | 0.564977 |
| Location | 14,792,346 – 14,792,497 |
|---|---|
| Length | 151 |
| Sequences | 9 |
| Columns | 155 |
| Reading direction | reverse |
| Mean pairwise identity | 71.04 |
| Shannon entropy | 0.60902 |
| G+C content | 0.40486 |
| Mean single sequence MFE | -39.27 |
| Consensus MFE | -11.30 |
| Energy contribution | -11.18 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.95 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.564977 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14792346 151 - 23011544 UAUAUAGAUCACAGCUGAAAAUACUUUAAAGG---UUAAUCGUGUUUACACACUUGGAAACACAAUUGGCAACG-AUCCGAGCUUGUGUCUAAUCUGAAAGACACUAAGUGCUAAUUUUCGGCUGUGUUAUUUGGGCCAAGUGCCAGAAACAAAG ....((((((((((((((((((.........(---(((((.((((((.((....)).)))))).))))))....-......((((((((((........)))))).))))....)))))))))))))..)))))(((.....))).......... ( -43.10, z-score = -3.10, R) >droWil1.scaffold_181137 6990 144 + 135874 AAAAAUGACCAUAACUU-GGACACUUUUGUG----UUAAUCGUGUUUACACUUCAGCACACAUACUUGGCACAA-AAC---AUUCCCGU-UAAUCUGUAAGUCAUCAAGUGUUAAUUUGUGCCAAAC-AACUUGGGCCAAGUGCCAGAGACAAUG ....(((.(((.....)-)).......((((----((....(((....)))...)))))))))..(((((((((-(((---(((.....-.................)))))...))))))))))..-..(((.(((.....))).)))...... ( -29.15, z-score = 0.36, R) >droPer1.super_5 2260877 151 - 6813705 ---ACGGAACAUAGCCUAAAAACCUGUUAACAACCUUAAUCGUGUUCACACACUUGGCAACACAAUUGGCAAGGAAACUGAAUUUAUGGCUAAUCUGUAAGCCAUCGAGUGCUAAUUUGCGCCAAGUGAGGUUGGGCCUAGUGCCAG-AACAGAG ---..((.......)).......(((((..(((((((....(((....)))(((((((..((.((((((((((....))...((.((((((........)))))).)).)))))))))).))))))))))))))(((.....)))..-))))).. ( -48.90, z-score = -3.17, R) >dp4.chr4_group1 2322636 151 + 5278887 ---ACGGAACAUAGCCUAAAAACCUGUUAACAACCUUAAUCGUGUUCACACACUUGGCAACACAAUUGGCAAGGAAACUGAAUUUAUGGCUAAUCUGUAAGCCAUCGAGUGCUAAUUUGCGCCAAGUGAGGUUGGGCCUAGUGCCAG-AACAGAG ---..((.......)).......(((((..(((((((....(((....)))(((((((..((.((((((((((....))...((.((((((........)))))).)).)))))))))).))))))))))))))(((.....)))..-))))).. ( -48.90, z-score = -3.17, R) >droAna3.scaffold_12916 15122695 135 + 16180835 -----------UAAAAACAAAUAAUUUCAAAC---UCAAUCGUGUUCGUG----UGGCAACACAAUUGGCAGCC-AACCCAGUUUGAGUCUAAUCUGCCAGGCACCGAGUGUUAAUUUGCUGUUAACAAAUCU-GGCCAAAUUCCAGGAACAAAG -----------.....................---.......(((((.((----((....))))..((((((..-.((.(.....).)).....))))))(((......(((((((.....))))))).....-.))).........)))))... ( -30.00, z-score = -0.87, R) >droEre2.scaffold_4929 6539513 150 - 26641161 UGCACAGAUCACAGCUGCAAAUACUUUUAGGG---UUAAUCGUGCUUACACACUUGGCAACACAAUUGGCAACC-UUCCUAG-UUGUGUCUAAUCUGAAAGACACUAAGAGUUAAUUUUCGGCGGUGUUAUUUGGGCCAAGUGCCAGAAACAAAG .((((.(((...((((..(((....)))..))---)).))))))).....((((((((.((((((((((.....-...))))-)))))).....(..((.((((((..(((......)))...)))))).))..)))))))))............ ( -41.80, z-score = -1.61, R) >droYak2.chr2L 14901318 133 - 22324452 -----------------UGUAUACUUUUAAGG---CUAAUCGUGCUUACACACUUGGCAACGCAAUUGGCAACG-UUCCGAGUUUAAGUCUAAUCUGAAAGACACUAAGUGUUAAUUUUCGGCAACGUUAUUU-GGCCAAGUGCCAGAAACAAAG -----------------.............((---(.....(((....)))(((((((...((.....))((((-(((((((......((......))..(((((...)))))....))))).))))))....-.)))))))))).......... ( -34.00, z-score = -1.61, R) >droSec1.super_3 1069397 151 - 7220098 UACAUAGAUCCCAGCUGAAAAUACUUUUAAGG---UUAAUCGUGUUUACACACUUGGAAACACAAUUGGCAAGG-AUCCUAACUUGUGUGUAAUCUGAAAGACACUAAGCGCUAAUUUUCGGCUGUGUUAUUUGGGCCAAGUGCCAGAAACAAAG ...........(((((((((((.(.((((..(---((..(((.(.((((((...((....))......(((((.-.......))))))))))).))))..)))..)))).)...)))))))))))((((.(((((........)))))))))... ( -36.20, z-score = -0.82, R) >droSim1.chr2L 14542721 150 - 22036055 UAAAUAGAUCCCAGCUGAAAAUACUUUUAAGG---UUAAUCGUGUUUACACACUUGAAAACACAAUUGGCAAGG-AUCCUAACUUGUGUCUAAUCUAAAAGACACUAAGCGCUAAUUUUCGGCUGUGUUAUUU-GGCCAAGUGCCAGAAACAAAG ...........(((((((((((.........(---(((((.((((((.((....)).)))))).))))))....-.......(((((((((........)))))).))).....)))))))))))((((.(((-(((.....))))))))))... ( -41.40, z-score = -3.61, R) >consensus ___ACAGAUCACAGCUGAAAAUACUUUUAAGG___UUAAUCGUGUUUACACACUUGGCAACACAAUUGGCAACG_AUCCGAAUUUGUGUCUAAUCUGAAAGACACUAAGUGCUAAUUUUCGGCAAUGUUAUUUGGGCCAAGUGCCAGAAACAAAG .........................................(((((..(......)..)))))..((((((................((((........)))).....(.(((.....................))))...))))))........ (-11.30 = -11.18 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:34 2011