| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,786,790 – 14,786,884 |
| Length | 94 |
| Max. P | 0.500000 |
| Location | 14,786,790 – 14,786,884 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 70.44 |
| Shannon entropy | 0.55627 |
| G+C content | 0.58919 |
| Mean single sequence MFE | -36.88 |
| Consensus MFE | -14.95 |
| Energy contribution | -17.72 |
| Covariance contribution | 2.76 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 14786790 94 + 23011544 CCACCAAGUGGCACUACAAUGCACUCUGU--GGAGUUGUGG----GUGGGUCGGC----GGUGGGUGAAGCUGGUGCAGUGGAACUGGAUGCCAGUGGA-UUGGG------- (((((...((((.((((...((((((...--.))).)))..----))))))))..----)))))......(..((.((.(((.........))).)).)-)..).------- ( -31.40, z-score = -0.01, R) >droSim1.chr2L 14536952 105 + 22036055 CCACCAAGUGGCACUACAAUGCACUCUGU--GGAGUUGUGG----GUGGGUCGGC-GGCGGUGGGUGUUGCUGGUGCAGUGGAACUGGAUGCCCGGGAAACUGGGGAUUGGG .(((((.(..(((((......((((((((--.((.((....----..)).)).))-)).)))))))))..))))))........((.(((.(((((....))))).))).)) ( -42.60, z-score = -1.76, R) >droSec1.super_3 1063708 105 + 7220098 CCACCAAGUGGCACUACAAUGCACUCUGU--GGAGUUGUGG----GUGGGUCGGC-GGCGGUGGGAGUUGCUGGUGCAGCGGAACUGGAUGCCCGGGAAACUGGGGAUUGGG (((((..((.((.((((...((((((...--.))).)))..----))))....))-.)))))))..(((((....)))))....((.(((.(((((....))))).))).)) ( -45.50, z-score = -2.59, R) >droYak2.chr2L 14895653 110 + 22324452 CCACCAAGUGGCACUACAAUGCACUCUGU--GGAGUUGUGGAGUUGUGGAUGGGUCGGUGGUGGGUGUAGUCGGUGCAGUGGUACUGGAUGCCCGGGAAACUGGGGAUUGGG ((((((..((((.(((((((((((((...--.))).)))...)))))))....)))).)))))).......((((((....))))))(((.(((((....))))).)))... ( -44.70, z-score = -2.88, R) >droEre2.scaffold_4929 6534224 101 + 26641161 CCACCAAGUGGCACUACAAUGCACUCUGU--GAAGUUGUGG----GUGGGUCGGUGGGUGC--GGUGCGGUGGA---ACUGGAACUGGAUGCCCGGGAAACUGGGGAUUGGG (((((..((.(((((.(.((.(((((...--........))----))).)).)...)))))--.))..))))).---.......((.(((.(((((....))))).))).)) ( -39.90, z-score = -2.10, R) >droWil1.scaffold_180764 3231787 83 + 3949147 CAACCAAGUGGCACUACAAUGCACUCAACCAGGAGCAGCAGAA--GACUAUGGAGUAGAGUUGUGUCCCGGGGAUGGAAAGGAAA--------------------------- ((.((..(.(((((.((..(((.(((......)))..)))...--..((((...)))).)).))))).)..)).)).........--------------------------- ( -17.20, z-score = 0.80, R) >consensus CCACCAAGUGGCACUACAAUGCACUCUGU__GGAGUUGUGG____GUGGGUCGGC_GGCGGUGGGUGUAGCUGGUGCAGUGGAACUGGAUGCCCGGGAAACUGGGGAUUGGG (((((..(((....)))..(((((((......))).))))...................)))))....................((.(((.(((((....))))).))).)) (-14.95 = -17.72 + 2.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:31 2011