| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,768,615 – 14,768,682 |
| Length | 67 |
| Max. P | 0.786841 |
| Location | 14,768,615 – 14,768,682 |
|---|---|
| Length | 67 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 65.60 |
| Shannon entropy | 0.67271 |
| G+C content | 0.41217 |
| Mean single sequence MFE | -15.93 |
| Consensus MFE | -5.91 |
| Energy contribution | -6.25 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.786841 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14768615 67 + 23011544 CUUCCCUGAAUUCAAUAGAGAUUCUCUACAUAGAAGGCGAUCCUAAGUGGAAGUCUGGAAAACCUGA .((((..........(((((...)))))......((((..(((.....))).))))))))....... ( -12.60, z-score = 0.36, R) >droAna3.scaffold_12916 15104134 58 - 16180835 -GUUCCCAGCGGCCACUGAGAUCAUAUAAAGACAUUCUGACUCUCUAGAAGA-----GAGAACC--- -(.((.(((......))).)).).................(((((.....))-----)))....--- ( -9.40, z-score = 0.14, R) >droEre2.scaffold_4929 6517622 66 + 26641161 CUUCCCUAAAUUCAAUGGAGAUUCCCUAAACAGUAGGGGAUCCCAAGGGAAAAUCUGGAAGUCUUA- (((((.....(((..(((.(((((((((.....))))))))))))...))).....))))).....- ( -23.40, z-score = -2.23, R) >droYak2.chr2L 14876534 67 + 22324452 CUGCCCUAAAUGCAGUGGAGCUUCUCUAAACAGAAGGUGUUCCUAAGUGAAAAUUGGGAAAACCUUG ((((.......))))(((((...))))).....(((((.(((((((.......))))))).))))). ( -18.70, z-score = -2.33, R) >droSec1.super_3 1044670 64 + 7220098 ---CCCUAAAUUCAAUGGAGAUUGUCUAAAUAAAAGACGAUCCUAAAUGGAAAUCUGGAAAACCGGA ---.......((((.(((.((((((((.......)))))))))))..))))..(((((....))))) ( -16.20, z-score = -3.00, R) >droSim1.chr2L 14515566 67 + 22036055 CUUCCCUAAAUUCAAUGGAGAUUGUCGAAAUAAAAGACGAUCCUAAAUGGAAAUCUGGAAAACCGGA ..........((((.(((.(((((((.........))))))))))..))))..(((((....))))) ( -15.30, z-score = -1.75, R) >consensus CUUCCCUAAAUUCAAUGGAGAUUCUCUAAAUAGAAGGCGAUCCUAAAUGAAAAUCUGGAAAACCUGA ...............(((.((((((((.......)))))))))))...................... ( -5.91 = -6.25 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:27 2011