| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,353,120 – 1,353,181 |
| Length | 61 |
| Max. P | 0.999405 |
| Location | 1,353,120 – 1,353,181 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 61.71 |
| Shannon entropy | 0.63928 |
| G+C content | 0.59791 |
| Mean single sequence MFE | -22.88 |
| Consensus MFE | -13.28 |
| Energy contribution | -14.36 |
| Covariance contribution | 1.08 |
| Combinations/Pair | 1.44 |
| Mean z-score | -2.45 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.86 |
| SVM RNA-class probability | 0.999405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1353120 61 + 23011544 UCCGCGGCAGCUGCUUCGGCCGCUCUUGCCCGGAUUACGGUCAAUCUUUGACUGUAUCUCG-- ((((.((((((.((....)).))...)))))))).((((((((.....)))))))).....-- ( -27.10, z-score = -4.62, R) >droSim1.chr2L 1325342 58 + 22036055 UCCGCAGCAGCUUUCUUUAGUGCAG-----CGGAACUUCGCUGACUUCCCGCAGAUUUUUGGG (((((.(((.((......))))).)-----)))).............((((........)))) ( -14.80, z-score = -0.12, R) >droSec1.super_14 1300606 61 + 2068291 UCCGCGGCAGCUGCUUCGGCCGCUCUGGCCCGGAUUACAGUCAAUCUCUGGCUGUAUCUCG-- ((((.((((((.((....)).)))...))))))).((((((((.....)))))))).....-- ( -27.40, z-score = -3.86, R) >droYak2.chr2L 1328080 61 + 22324452 UCCGCGGCAGCUGCCUCUGCGGCUCUGGCCCGGAUCACAGUCAAUCUCUGGCUGAACCUCG-- ((((.(((((((((....))))))...)))))))...((((((.....)))))).......-- ( -25.10, z-score = -2.56, R) >droEre2.scaffold_4929 1393587 58 + 26641161 UCCGCAUCAGCUUUCUUCAGGGCAG-----CGGAAUCCCGCUGACUUGCCGCGGAUUUUUGGG (((((...((....)).((((.(((-----(((....)))))).))))..)))))........ ( -20.00, z-score = -1.08, R) >consensus UCCGCGGCAGCUGCCUCGGCCGCUCU_GCCCGGAUUACAGUCAAUCUCUGGCUGAAUCUCG__ ((((.((((((.((....)).)))...)))))))...((((((.....))))))......... (-13.28 = -14.36 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:23 2011