| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,721,422 – 14,721,534 |
| Length | 112 |
| Max. P | 0.611771 |
| Location | 14,721,422 – 14,721,534 |
|---|---|
| Length | 112 |
| Sequences | 8 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 79.53 |
| Shannon entropy | 0.38303 |
| G+C content | 0.40412 |
| Mean single sequence MFE | -22.51 |
| Consensus MFE | -13.50 |
| Energy contribution | -13.88 |
| Covariance contribution | 0.38 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.611771 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14721422 112 - 23011544 GCGUAAUUU--CGGA---UGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAA-AUAAGUACGCAGAUAUGUAUACACACACAUACGCGGACACAUAUAC (((((.(((--((..---((((((.........))))))...((((((.....))))))......))))).-....(((..((....))..))).......)))))............ ( -25.90, z-score = -2.60, R) >droSim1.chr2L 14470854 110 - 22036055 GCGUAAUUU--CGGA---UGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAA-AUAAGUACGCAGAUAUGUAUACACACACAUACGCGGACGUAUAC-- (((((.(((--((..---((((((.........))))))...((((((.....))))))......))))).-....(((..((....))..))).......)))))..........-- ( -25.90, z-score = -2.01, R) >droSec1.super_3 997129 110 - 7220098 GCGUAAUUU--CGGA---UGCAGUAAAAAUUCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAA-AUAAGUACGCAGAUAUGUAUACACACACAUACGCGGACGUAUAC-- (((((.(((--((..---((((((.........))))))...((((((.....))))))......))))).-....(((..((....))..))).......)))))..........-- ( -25.90, z-score = -2.02, R) >droYak2.chr2L 14828429 110 - 22324452 GCGUAAUUU--CGGA---UGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAA-AUAAGUACGCAGAUAUGUAUACACACAUAUACGCGGCCGGAUAC-- (((((.(((--((..---((((((.........))))))...((((((.....))))))......))))).-....(((..((....))..))).......)))))..........-- ( -25.90, z-score = -1.76, R) >droEre2.scaffold_4929 6473861 99 - 26641161 GCGCAAUUU--CGGA---UGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAA-AUAAGUACGCAGAUAUGUGCACACACACACACC------------- (((((.(((--((..---((((((.........))))))...((((((.....))))))......))))).-....(....).....))))).............------------- ( -20.20, z-score = -1.05, R) >droAna3.scaffold_12916 15063922 96 + 16180835 GCGUAAUUU--CGGA---UGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGGAAA-AUAAGUACACAGAUACGAACGCGCAGGGAC---------------- ((((..(((--((..---((((((.........))))))...((((((.....))))))......))))).-....(((......)))....))))......---------------- ( -20.10, z-score = -0.99, R) >droVir3.scaffold_12963 15170920 97 + 20206255 GCGUAAUUUGGCGGAAGCUGCAGUAAAAAUCCAGCUGCAGAUGUUGCGAAGCACGAAAUUAAUUACAACAAUAUACACACACACACACACAUACACG--------------------- .(((..(((.((((...(((((((.........)))))))...)))).))).)))..........................................--------------------- ( -17.80, z-score = -0.78, R) >droGri2.scaffold_15252 462326 97 - 17193109 GCGUAAUUUGACGGAAGCUGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAGCAUACACAGACAAACACACACACACA--------------------- .(((((((...(....)(((((((.........)))))))..((((((.....)))))).)))))))..............................--------------------- ( -18.40, z-score = -1.46, R) >consensus GCGUAAUUU__CGGA___UGCAGUAAAAAUCCAGCUGCAGAUGUUUCGAAGCACGAAAUUAAUUACGAAAA_AUAAGUACGCAGAUAUGUAUACACACACAUACG_____________ .(((((((..........((((((.........))))))...((((((.....)))))).)))))))................................................... (-13.50 = -13.88 + 0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:20 2011