| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,656,709 – 14,656,817 |
| Length | 108 |
| Max. P | 0.699312 |
| Location | 14,656,709 – 14,656,817 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 109 |
| Reading direction | forward |
| Mean pairwise identity | 89.28 |
| Shannon entropy | 0.20360 |
| G+C content | 0.43077 |
| Mean single sequence MFE | -29.92 |
| Consensus MFE | -19.14 |
| Energy contribution | -20.62 |
| Covariance contribution | 1.48 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.699312 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14656709 108 + 23011544 GAAACGGUGUUCGGCGUUUGUCUAUUUAUGGAUAGGCGCAAUGCUCCGCUCUAC-ACGUCUAUUCCUAUAUAGACUUUGGCCGGUUUCACAUUUCAUUAAGUGGAAAAU (((((((.((...(((((((((((....)))))))))))...)).))(((....-..((((((......))))))...)))..)))))...((((((...))))))... ( -32.50, z-score = -2.94, R) >droSim1.chr2L 14405384 106 + 22036055 GAAACGGUGUUCGGCGUUUGUCUAUUUAUGGAUAGG--CAAUGCUCGGCUCUAC-ACGUCUAUUCCUAUAUAGACUUUGGCCGGUUUCACAUUUCAUUCAGUGGAAAAU (((((.......((((((.(((((((....))))))--)))))))(((((....-..((((((......))))))...))))))))))...((((((...))))))... ( -31.50, z-score = -2.99, R) >droSec1.super_3 930439 106 + 7220098 GAAACGGUGUUCGGCGUUUGUCUAUUUAUGGAUAGG--CAAUGCUCGGCUCUAC-ACGUCUAUUCCUAUAUAGACUUUGGCCGGUUUCACAUUUCAUUCAGUGGAAAAU (((((.......((((((.(((((((....))))))--)))))))(((((....-..((((((......))))))...))))))))))...((((((...))))))... ( -31.50, z-score = -2.99, R) >droYak2.chr2L 14762794 106 + 22324452 GAAACGGUGUUCGGUGUUUGCCUGUAUAUGGAUAGG--CAAUGCACGGCUCUAC-UCGUCUAUUCCUAUAUAGACUUUGGCCGGUUUCACAUUUCAUUCAGUGGAAAAU (((((........((((((((((((......)))))--))).))))((((....-..((((((......))))))...)))).)))))...((((((...))))))... ( -32.20, z-score = -2.52, R) >droEre2.scaffold_4929 6403952 107 + 26641161 GAAACGGUGUUCGGCGUUUGUCUAUUUAUGGAUAGG--CAAUGCACGGCUCUACCACGUCUACUCCCAUAUAGACUUUGGCCGGUUUCACAUUUCAUUCAGUGGAAAAU (((((........(((((.(((((((....))))))--)))))).(((((.......(((((........)))))...))))))))))...((((((...))))))... ( -29.00, z-score = -1.55, R) >droAna3.scaffold_12916 15002918 96 - 16180835 GAAACGG--UUCGGUGUUUGCCUAUUUAUGGCCAGG--CAAUGCAUUGCUCUAC---------ACAUAUAUACACCUCGGCCGGUUUCACAUUUCAUUCAGUAGAAAAU (((((((--((.(((((..(((.......))).(((--(((....)))).))..---------........)))))..)))).)))))...((((........)))).. ( -22.80, z-score = -1.33, R) >consensus GAAACGGUGUUCGGCGUUUGUCUAUUUAUGGAUAGG__CAAUGCACGGCUCUAC_ACGUCUAUUCCUAUAUAGACUUUGGCCGGUUUCACAUUUCAUUCAGUGGAAAAU (((((........(((((..((((((....))))))...))))).(((((.......((((((......))))))...))))))))))...((((((...))))))... (-19.14 = -20.62 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:11 2011