| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,627,421 – 14,627,501 |
| Length | 80 |
| Max. P | 0.939929 |
| Location | 14,627,421 – 14,627,501 |
|---|---|
| Length | 80 |
| Sequences | 9 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 85.94 |
| Shannon entropy | 0.29426 |
| G+C content | 0.41116 |
| Mean single sequence MFE | -23.12 |
| Consensus MFE | -12.83 |
| Energy contribution | -13.78 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.939929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14627421 80 - 23011544 ------GAGCAGAGCAGGGAAACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCAGCU ------.(((..((((((....))))))((.....(((((....)))))..(((((((((........)))))))))..))..))) ( -29.70, z-score = -4.32, R) >droAna3.scaffold_12916 14984374 75 + 16180835 -----------GAGCCGGGAAACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCGGCU -----------.((((((....)).((((......(((((....)))))..(((((((((........))))))))))))).)))) ( -27.30, z-score = -4.12, R) >droEre2.scaffold_4929 6383787 79 - 26641161 ------GAGCAGAGCAGGU-AACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCAGCU ------.(((..((((((.-..))))))((.....(((((....)))))..(((((((((........)))))))))..))..))) ( -24.20, z-score = -2.69, R) >droYak2.chr2L 14742050 79 - 22324452 ------GAGCAGAGCAGGG-AACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCAGCU ------.(((..((((((.-..))))))((.....(((((....)))))..(((((((((........)))))))))..))..))) ( -24.20, z-score = -2.36, R) >droSec1.super_3 900853 80 - 7220098 ------GAGCAGAGCAGGGAAACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCAGCU ------.(((..((((((....))))))((.....(((((....)))))..(((((((((........)))))))))..))..))) ( -29.70, z-score = -4.32, R) >droSim1.chr2L 14383657 80 - 22036055 ------GAGCAGAGCAGGGAAACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCAGCU ------.(((..((((((....))))))((.....(((((....)))))..(((((((((........)))))))))..))..))) ( -29.70, z-score = -4.32, R) >droWil1.scaffold_180764 2996441 83 - 3949147 GAUGGGAGUUAGAAGAAGCUAACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGGCCAGAA--- ..(((((((.(((((.(((......)))......))))).))))........((((((((........)))))))).)))...--- ( -18.10, z-score = -0.72, R) >droMoj3.scaffold_6500 15707361 80 - 32352404 ------AAUAAGAAAAGAAAAACCUGCUGCAUCAUUUUUUACUCGAAGAUUACAUAAUGAUUGACAAUUCAUUAUGCCAGCGAGCU ------...................(((((...((((((.....))))))..((((((((........))))))))...)).))). ( -12.70, z-score = -1.19, R) >droVir3.scaffold_12723 2515595 77 - 5802038 --------AACAGAAACAAAAACCUGCUGCAUCAUUUUUUACUCGAAGAUUACAUAAUGAUUGACAAUUCAUUAUGCCAGCGAGC- --------................(((((....((((((.....))))))..((((((((........)))))))).)))))...- ( -12.50, z-score = -1.57, R) >consensus ______GAGCAGAGCAGGGAAACCUGCUGCAUCAUUUUUCACUCGAAGAUUGCAUAAUGAUUGACAAUUCAUUAUGCCAGCCAGCU ...............(((....)))(((((..((.(((((....))))).))((((((((........))))))))...)).))). (-12.83 = -13.78 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:06 2011