Locus 1903

Sequence ID dm3.chr2L
Location 14,613,070 – 14,613,180
Length 110
Max. P 0.500000
window2622

overview

Window 2

Location 14,613,070 – 14,613,180
Length 110
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.14
Shannon entropy 0.42825
G+C content 0.49788
Mean single sequence MFE -32.97
Consensus MFE -19.01
Energy contribution -19.43
Covariance contribution 0.42
Combinations/Pair 1.42
Mean z-score -1.31
Structure conservation index 0.58
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.01
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>dm3.chr2L 14613070 110 - 23011544
UACCAG-GGGCAAGGGGGAACCCUACUAGCGCACGUUCCAUUUAUUUGGGGCGCGGCUUGCAUUGCAUCUCGAUGCAAACAUAAUCUAAUUUACUAUUCCACUGCCUGACC
...(((-(.(((((((....))))...(((.(.(((((((......))))))).))))))).((((((....))))))..........................))))... ( -35.40, z-score =  -2.24, R)
>droSim1.chr2L 14369899 108 - 22036055
UUUCCAGGGGCCAGGGGGAA---CCCUUGCGCACGUUCCAUUUAUUUGGGGCGCGGCUUGCAUUGCAUCUCGAUGCAAACAUAAUAUAAUUUACUAUUCCACUGCCUGACC
....((((.((.((((....---)))).))((.(((((((......)))))))..))((((((((.....))))))))..........................))))... ( -35.30, z-score =  -1.83, R)
>droSec1.super_3 886672 103 - 7220098
UUUCCAGGGGCCAGGGGGAA---CCCUUGCGCACGUUCCAUUUAUUUGGGGCGCGGCUUGCAUUGCAUCUCGAUGCAAACAUAAUCUAAUUUACUAUUCCACUGCC-----
....(((((((.((((....---)))).))((.(((((((......)))))))..))((((((((.....))))))))....................)).)))..----- ( -34.00, z-score =  -1.89, R)
>droYak2.chr2L 14727097 106 - 22324452
-UUUAAGGGGCCAGGGGAA----CCCUAGCACACGUUCCGUUUAUUUGGGGCGCGGCUUGCAGUGCAUCUCGAUGCAAACAUAAUCUAAUUUACUAUUCCACCGCCUGACC
-......((((..((((((----....(((.(.(((((((......))))))).)))).....(((((....)))))...................)))).)))))).... ( -29.00, z-score =  -0.20, R)
>droEre2.scaffold_4929 6369804 111 - 26641161
UCCCAGUGGGCGGGAAGGGGGGACCCUAGCGCACGUUCCAUUUAUUUGGGGCGCGGCUUGCACUGCAUCUCGAUGCAAACAUAAUCUAAUUUACUAUUCCACUGCCUGACC
...(((((((((((.((((....))))..(((..((((((......))))))))).)))))..(((((....))))).....................))))))....... ( -38.90, z-score =  -1.68, R)
>droAna3.scaffold_12916 14971271 111 + 16180835
CUUCGAGGGCCCCCGUAUAACCGUAGACGUGUUCCACAUGCAUAUUUGGGGCGAGGUUUCUAUUGCAUCUUGAUGCAAAGAUAAUCUAAUUUGUUAUUCCAAUGUUUGACC
......(((((((((......))..(.((((.....)))))......))))).((((((((.((((((....))))))))).)))))...........))........... ( -25.20, z-score =  -0.01, R)
>consensus
UUUCAAGGGGCCAGGGGGAA___CCCUAGCGCACGUUCCAUUUAUUUGGGGCGCGGCUUGCAUUGCAUCUCGAUGCAAACAUAAUCUAAUUUACUAUUCCACUGCCUGACC
.......((((...((((..........((.(.(((((((......))))))).)))((((((((.....))))))))..................))))...)))).... (-19.01 = -19.43 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:04 2011