| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,606,468 – 14,606,562 |
| Length | 94 |
| Max. P | 0.636343 |
| Location | 14,606,468 – 14,606,562 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 76.25 |
| Shannon entropy | 0.44776 |
| G+C content | 0.52797 |
| Mean single sequence MFE | -22.43 |
| Consensus MFE | -11.47 |
| Energy contribution | -12.17 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.63 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.636343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14606468 94 - 23011544 AGGCUUUUGCUUGAACGCGAUGGGCCGACAAGUCGACCAAUUAAAGGCAUA------CCCCAUGCCCAUCGUCAUCACCAUCGCCAUUGCACCGUAACCC .(((...((..(((..((((((((((((....)))..........((....------..))..)))))))))..))).))..)))............... ( -25.80, z-score = -1.75, R) >droSim1.chr2L 14358321 94 - 22036055 AGGCUUUUGCUUUAGCGCGAUGGGCCGACAAGUCGACCAAUUAAAGGCAUA------CCCCAUGCCCAUCGUCAUCACCAUCGCCAUUACUCCGUAACCC .(((....((....))((((((((((((....)))..........((....------..))..)))))))))..........)))............... ( -25.90, z-score = -2.47, R) >droSec1.super_3 880127 94 - 7220098 AGGCUUUUGCUUUAGCGCGAUGGGCCGACAAGUCGACCAAUUAAAGGCAUA------CCCCAUGCCCAUCGUCAUCACCAUCGCCAUUACUCCGUAACCC .(((....((....))((((((((((((....)))..........((....------..))..)))))))))..........)))............... ( -25.90, z-score = -2.47, R) >droYak2.chr2L 14720440 92 - 22324452 -AGCCUUUGCUUUUCUGCGAUGGGCCGACAAGUCGACCAAUUAAAGGCAUACCCCGUGCCCAUCGUCAUCGUCAUCACCAUCACCAUUGCUCC------- -(((....))).....((((((((((((....)))..........((......))..)))))))))...........................------- ( -19.40, z-score = -0.57, R) >droEre2.scaffold_4929 6363123 100 - 26641161 AGCCCUUUGCCUUUGCGCGAUGGGCCGACAAGUCGACCAAUUAAAGGCAUACCCAUGCCCCGUGACCAUCGUCAUCACCAUCGCCAUUGCUCCGUAACCC ........((...((.(((((((..(((....)))..........(((((....)))))..(((((....)))))..)))))))))..)).......... ( -26.40, z-score = -1.84, R) >droWil1.scaffold_180764 2967708 85 - 3949147 --AUCUUUUCUUUG--GCAAUCGACCGACAAGUCGACCAAUUAAAGGCAAAUCC---CCCCUUACCCCAUAUCAGACACAAUUCCUUGACGC-------- --..(((((..(((--(...(((((......)))))))))..))))).......---...................................-------- ( -11.20, z-score = -0.68, R) >consensus AGGCCUUUGCUUUAGCGCGAUGGGCCGACAAGUCGACCAAUUAAAGGCAUA______CCCCAUGCCCAUCGUCAUCACCAUCGCCAUUACUCCGUAACCC ................(((((((..(((....)))..........(((((...........)))))...........)))))))................ (-11.47 = -12.17 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:03 2011