| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,606,341 – 14,606,397 |
| Length | 56 |
| Max. P | 0.564702 |
| Location | 14,606,341 – 14,606,397 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | reverse |
| Mean pairwise identity | 89.88 |
| Shannon entropy | 0.16273 |
| G+C content | 0.50893 |
| Mean single sequence MFE | -10.23 |
| Consensus MFE | -10.00 |
| Energy contribution | -10.25 |
| Covariance contribution | 0.25 |
| Combinations/Pair | 1.00 |
| Mean z-score | -0.71 |
| Structure conservation index | 0.98 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.564702 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14606341 56 - 23011544 CUCUGUUUCUGUCAGAGCUUUGAGCUGGAUCCCCCGUAACCAUACCCAUCCCGAAC (((((.......))))).((((.(.(((.................))).).)))). ( -6.83, z-score = 0.43, R) >droSim1.chr2L 14358194 56 - 22036055 CUCUGUUUCUGUCAGAGCUUUGAGCUGGAUCCCCAGUAACCAUACCCAUUCCGAAC (((((.......)))))......(((((....)))))................... ( -11.10, z-score = -1.08, R) >droSec1.super_3 880000 56 - 7220098 CUCUGUUUCUGUCAGAGCUUUGAGCUGGAUCCCCAGUAACCAUACCCAUUCCGAAC (((((.......)))))......(((((....)))))................... ( -11.10, z-score = -1.08, R) >droYak2.chr2L 14720330 50 - 22324452 CUCUGUUUCUGUCAGAGUUUUGAGCUGGAUCUCCAGUACCCA----CAUCCCGA-- (((((.......)))))......(((((....))))).....----........-- ( -11.90, z-score = -1.10, R) >consensus CUCUGUUUCUGUCAGAGCUUUGAGCUGGAUCCCCAGUAACCAUACCCAUCCCGAAC (((((.......)))))......(((((....)))))................... (-10.00 = -10.25 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:02 2011