Locus 190

Sequence ID dm3.chr2L
Location 1,324,319 – 1,324,436
Length 117
Max. P 0.655135
window265

overview

Window 5

Location 1,324,319 – 1,324,436
Length 117
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 93.26
Shannon entropy 0.09183
G+C content 0.44509
Mean single sequence MFE -32.90
Consensus MFE -30.74
Energy contribution -30.52
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.32
Structure conservation index 0.93
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.35
SVM RNA-class probability 0.655135
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 1324319 117 - 23011544
GUGGUUUCUGUGGCGC---UCCCAUUUAAGUGCAUUAUUCGGAGAUUUCAAAGUUCCCAGGUUAUUGUGAGGCAAGGAAUAAAAGGAGCCAACUCGAAAUGGCCUGAGAACAAUUUCUGC
(..(((((((..((((---(........)))))......)))))))..)...((((.(((((((((.((((....((...........))..)))).))))))))).))))......... ( -33.20, z-score =  -1.07, R)
>droSim1.chr2L 1297114 119 - 22036055
GUGGUUUCUGUGGCGCUCCUCCCAUUUAAGUGCAUUAUUCGGAGAUUUCAAAGUUCCCAGGUUAUUGUGAGGCAAGGAAUAAAAGCAGCCAACUCAAAAUGGCCUGAGAACAAUUUC-GC
(..(((((((..(((((...........)))))......)))))))..)...((((.(((((((((.((((....((...........))..)))).))))))))).))))......-.. ( -32.90, z-score =  -1.16, R)
>droSec1.super_14 1272705 110 - 2068291
GUGGUUUCUGUGGCGC---------UUAAGUGCAUUAUUCGGAGAUUUCAAAGUUCCCAGGUUAUUGUGAGGCAAGGAAUAAAAGCAGCCAACUCGAAAUGGCCUGAGAACAAUUUC-GC
(..(((((((..((((---------....))))......)))))))..)...((((.(((((((((.((((....((...........))..)))).))))))))).))))......-.. ( -32.60, z-score =  -1.73, R)
>consensus
GUGGUUUCUGUGGCGC___UCCCAUUUAAGUGCAUUAUUCGGAGAUUUCAAAGUUCCCAGGUUAUUGUGAGGCAAGGAAUAAAAGCAGCCAACUCGAAAUGGCCUGAGAACAAUUUC_GC
(..(((((((..((((.............))))......)))))))..)...((((.(((((((((.((((....((...........))..)))).))))))))).))))......... (-30.74 = -30.52 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:20 2011