| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,601,149 – 14,601,256 |
| Length | 107 |
| Max. P | 0.848913 |
| Location | 14,601,149 – 14,601,256 |
|---|---|
| Length | 107 |
| Sequences | 12 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 71.51 |
| Shannon entropy | 0.63226 |
| G+C content | 0.48729 |
| Mean single sequence MFE | -36.25 |
| Consensus MFE | -10.36 |
| Energy contribution | -10.39 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.14 |
| Mean z-score | -2.23 |
| Structure conservation index | 0.29 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.90 |
| SVM RNA-class probability | 0.848913 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14601149 107 + 23011544 UCUGAUAGAUGGCAAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCUCGGGCCCAUCGAGAUCUCGAUAGAGUUGCGAUCUCUGACUCUGAUCAGAAGCG ((((((((((.((((.....((((.(((((((.((.((((.......)))).))))))))).))))...(((....))))))).)))).........)))))).... ( -40.10, z-score = -2.57, R) >droGri2.scaffold_15126 935679 107 - 8399593 UCUGAUAUAUGGCAAAUAUAUCGCUUGGCUUGUAGCACGGCUCAUAUUUAUAUUCAAGCUCAUCGAUUUCGAUUUCGAUUUCAAUAUUGUUGCCGGAAUCAGAAGUG ((((((...((((((..((((.((((((..(((((............))))).)))))).....((..(((....)))..)).))))..))))))..)))))).... ( -26.80, z-score = -1.59, R) >droMoj3.scaffold_6500 15676297 95 + 32352404 UCUGAUAGAUGGCAAAUAUAUCGUAGGGCUUGUAGCACGGCUCAUAGGCUAGCUCAAUGUCAGCGGUAUCGAUAUCG------------UUGCCGGAAUCAGAAAUG ((((((...((((((..((((((..(((((........)))))....(((..(.....)..))).....))))))..------------))))))..)))))).... ( -31.20, z-score = -2.39, R) >droVir3.scaffold_12723 2490775 95 + 5802038 UCUGAUAUAUGGCAAAUAUAUCGCAGGGCUUGUAGCACGGCUCAUAGGCUAGCUCUUCGCCAGUGCUUUCGAUAUCG------------UUGCCGGAAUCAGAAUUG ((((((...((((((..((((((...((((((((((...))).)))))))(((.((.....)).)))..))))))..------------))))))..)))))).... ( -31.60, z-score = -2.09, R) >droWil1.scaffold_180764 2962246 101 + 3949147 UCUGAUAGAUCUCAAAUAUAUCGAAUGUUUUAUAGCAUGGCUCAUAGCCGAUUGCA---UCAAUGUUAUCGAUAUCGAUUUGAAU-UUGUUGAC--AAUCAGAAUUG ((((((.(.((.(((((..(((((.((((..((((((((((.....)))(((...)---)).))))))).)))))))))....))-)))..)))--.)))))).... ( -24.20, z-score = -1.36, R) >droPer1.super_5 1985586 101 + 6813705 UCUGAUAGAUGGCAAAUAUAUCGAACGGCCGGUAGCACGGCUCGUAGCCGUCCUCGAGCGC--UGGAUACUCGCU----CUGGAUCGCUCGCAUCUGAUCAGAAGAG (((((((((((.(...........(((((((......)))).)))(((.((((..(((((.--.(....).))))----).)))).))).)))))).)))))).... ( -38.50, z-score = -1.72, R) >dp4.chr4_group1 2041953 101 - 5278887 UCUGAUAGAUGGCAAAUAUAUCGAACGGCCGGUAGCACGGCUCAUAGCCGUCCUCGAGCGC--CGGAUACUCGCU----CUGGAUCGCUCGCAUCUGAUCAGAAGAG (((((((((((.......(((((......)))))(.(((((.....))))).).(((((((--((((.......)----))))..))))))))))).)))))).... ( -37.10, z-score = -1.55, R) >droAna3.scaffold_12916 14959754 95 - 16180835 UCUGAUAGAUGGCGAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCCCGGGCCCAUCGAGAUCUCGCU----CCGGGC--------UCUGAUCAGAAGCG (((((((((.(((((.....((((.(((((((..(.((((.......)))))..))))))).))))....)))))----......--------))).)))))).... ( -36.60, z-score = -1.68, R) >droEre2.scaffold_4929 6357871 107 + 26641161 UCUGAUAGAUGGCAAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCUCGGGCCCAUCGAGAUCUCGAUAGAGUUGGGAUCUCUGGCUCUGAUCAGAAGCG (((((((((.(.((........((.(((((((.((.((((.......)))).))))))))).))(((((((((((...))))))))))))).)))).)))))).... ( -45.50, z-score = -3.49, R) >droYak2.chr2L 14715167 107 + 22324452 UCUGAUAGAUGGCAAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCUCGGGCCCAUCGAGAUCUCGAUAGAGUUGGGAUCUCUGACUCUGAUCAGAAGCG (((((((((...((........((.(((((((.((.((((.......)))).))))))))).))(((((((((((...)))))))))))))..))).)))))).... ( -43.20, z-score = -3.20, R) >droSec1.super_3 874887 107 + 7220098 UCUGAUAGAUGGCAAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCUCGGGCCCAUCGAGAUCUCGAUAGAGUUGCGAUCUCUGACUCUGAUCAGAAGCG ((((((((((.((((.....((((.(((((((.((.((((.......)))).))))))))).))))...(((....))))))).)))).........)))))).... ( -40.10, z-score = -2.57, R) >droSim1.chr2L 14353074 107 + 22036055 UCUGAUAGAUGGCAAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCUCGGGCCCAUCGAGAUCUCGAUAGAGUUGCGAUCUCUGACUCUGAUCAGAAGCG ((((((((((.((((.....((((.(((((((.((.((((.......)))).))))))))).))))...(((....))))))).)))).........)))))).... ( -40.10, z-score = -2.57, R) >consensus UCUGAUAGAUGGCAAAUAUAUCGAAGGGCCUGUAGCAUGGCUCGUAACCAUCCUCGGGCCCAUCGAGAUCUCGAUAGA_UUGGGAUCUCUGGCUCUGAUCAGAAGCG ((((((.((((.......))))....((((........)))).......................................................)))))).... (-10.36 = -10.39 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:41:00 2011