| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,597,448 – 14,597,562 |
| Length | 114 |
| Max. P | 0.749741 |
| Location | 14,597,448 – 14,597,562 |
|---|---|
| Length | 114 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 75.93 |
| Shannon entropy | 0.43222 |
| G+C content | 0.38222 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -15.78 |
| Energy contribution | -16.22 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.53 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14597448 114 + 23011544 UGUUAUGGUUGCCAAUGAUCAGAUCACUGCUCAUAGGUGACCCAAAUUCUGUGCCUGCUACUUAUACAUAUUCAUAGCCAAAACAGUUCAUUUUUGUUUAAAUAUGUGACAGUG (((((((((..((.((((.(((....))).)))).))..)))((((..((((....((((...((....))...))))....))))......)))).........))))))... ( -26.50, z-score = -1.31, R) >droSim1.chr2L 14349068 114 + 22036055 UGUUAUGGUUGCCAAUGAUCAGAUCACUGCUCAUAGGUGACCCAAAUUCUGGGCAAGCUACUUGUACAUAUUCGUAGCCAAAACAGUUCAUUUUUGUUUAAAUAUGUGACACUA (((((((((..((.((((.(((....))).)))).))..)))((((..(((.....(((((..((....))..))))).....)))......)))).........))))))... ( -28.50, z-score = -1.49, R) >droSec1.super_3 871171 114 + 7220098 UGUUAUGGUUGCCAAUGAUCAGAUCACUGCUCAUAGGUGACCCAAAUUCUGGGCAAGCUACUUGUACAUAUUCGUAGGCAAAACAGUUCCUUUUUGUUUAAAUAUGUUACACUA ......(((..((.((((.(((....))).)))).))..)))..........(((((...)))))(((((((..(((((((((........))))))))))))))))....... ( -28.10, z-score = -1.41, R) >droYak2.chr2L 14711901 101 + 22324452 UGUUGUGGAUGCCAAUGAUCAGAUCGCUGCUCGUAGGUGACCCAAAUACUGGGCAACAUAUUUCUAUAUAUUCGUAUACA---UGUAUUAGUUUCGUGUUACUA---------- ...((((((.(((.((((.(((....))).)))).)))(.((((.....)))))........)))))).....(((.(((---((.........))))))))..---------- ( -22.20, z-score = 0.07, R) >droEre2.scaffold_4929 6353278 92 + 26641161 UGUUAUGGCUGCCAAUGAUCAGAUCGCUGCUCAUAGGUGACCCAAAUUCUGGUCAAGAUAUUUGUACAUAUUCCUAGCCAUAACUUCUACUA---------------------- .((((((((((((.((((.(((....))).)))).)))((((........)))).....................)))))))))........---------------------- ( -27.70, z-score = -3.50, R) >consensus UGUUAUGGUUGCCAAUGAUCAGAUCACUGCUCAUAGGUGACCCAAAUUCUGGGCAAGCUACUUGUACAUAUUCGUAGCCAAAACAGUUCAUUUUUGUUUAAAUAUGU_ACA_U_ .(((.((((((((.((((.(((....))).)))).)))..((((.....))))......................))))).))).............................. (-15.78 = -16.22 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:58 2011