| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,592,789 – 14,592,893 |
| Length | 104 |
| Max. P | 0.526011 |
| Location | 14,592,789 – 14,592,893 |
|---|---|
| Length | 104 |
| Sequences | 7 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 73.16 |
| Shannon entropy | 0.53408 |
| G+C content | 0.47224 |
| Mean single sequence MFE | -28.62 |
| Consensus MFE | -17.64 |
| Energy contribution | -16.63 |
| Covariance contribution | -1.01 |
| Combinations/Pair | 1.65 |
| Mean z-score | -0.65 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526011 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14592789 104 - 23011544 UUCCCACUGAUGCUGGCGAAUUCUAUUUAAAUUGUUUCGCCAGUGCCAAUCGA--GGUGG--AUUCUCCGUAGCUCCGUUUAAUGGGCAGUUGCUAGCUUGCUGCUUG ...(((((((((((((((((...............)))))))))....)))..--)))))--.......((((((((........)).)))))).(((.....))).. ( -29.76, z-score = -1.00, R) >droSim1.chr2L 14344529 104 - 22036055 UUCCCAGUGAUGCUGGCGAAUUCUAUUUAAAUUGUUUCGCCAGUGCCAAUCGA--GGUGG--AUUCUCCGUAGCUCCGUUUAAUGGGCAGUUGCUAGCUGGCUGCUUG ...((((((..(((((((((...............)))))))))..)....((--((...--..)))).((((((((........)).))))))..)))))....... ( -31.56, z-score = -1.02, R) >droYak2.chr2L 14706793 104 - 22324452 UUCCCAUUGAUGCCGGCGAAGUCUAUUUAAAUUGUUUCGCCAGUGCCAAUCGA--GGUGG--AUUCUCCGUAGCUCCGUUUAAUGGGCAGUUGCUAGCUCACUGCUUG ...(((((((.(((((.(((.(((((((..((((...(....)...))))..)--)))))--)))).)))..)).....)))))))(((((.(....)..)))))... ( -26.30, z-score = -0.00, R) >droEre2.scaffold_4929 6348754 101 - 26641161 UUCCCAUUGAUGCUGGCGAAGUCUAUUUAAAUUGUUUCGCCAGUGCCAAUCGA---GUGG--AUUCUCC--AGCUCCGUUUAAUGGGCAGUUGGUUGCCUGCUGCCUG .....((((..((((((((((.(..........)))))))))))..)))).((---((((--.....))--).)))........(((((((.((...)).))))))). ( -35.90, z-score = -3.26, R) >dp4.chr4_group1 2033343 108 + 5278887 UCCUCAUUGAUGUUGGCGAAUUCUAUUUAAAUUGUUGCGCCAAUGCCAAUCGAGAGGUGGAUAUUCUCUGGAGCUUCGCUUAAUGGGCAGUUUGUAUCUGGUUGUUGG ..(((((((..((((((((((............))).)))))))..)))).)))(((((((..(((....))).)))))))((..(.(((.......))).)..)).. ( -26.30, z-score = 0.09, R) >droPer1.super_5 1976963 108 - 6813705 UCCUCAUUGAUGUUGGCGAAUUCUAUUUAAAUUGUUGCGCCAAUGCCAAUCGAGAGGUGGAUAUUCUCUGGAGCUUCGCUUAAUGGGCAGUUUGUAUCUGGUUGUUGG ..(((((((..((((((((((............))).)))))))..)))).)))(((((((..(((....))).)))))))((..(.(((.......))).)..)).. ( -26.30, z-score = 0.09, R) >droMoj3.scaffold_6540 14503081 94 - 34148556 --GUCGCCUUUUAACGUGUGCUUUGUUUAACGAAUCGUGCAAAUGCGGGUGGA--AUUGG--AAUAUGCCCAGCUCCGUGGGGCGAUGAGCAGUUUAUUU-------- --((((((((...((.((((.(((((...(((...)))))))))))).))(((--.((((--.......)))).)))..)))))))).............-------- ( -24.20, z-score = 0.52, R) >consensus UUCCCAUUGAUGCUGGCGAAUUCUAUUUAAAUUGUUUCGCCAGUGCCAAUCGA__GGUGG__AUUCUCCGUAGCUCCGUUUAAUGGGCAGUUGCUAGCUGGCUGCUUG ..((((((((.(((((((((...............)))))))))(((........))).....................))))))))..................... (-17.64 = -16.63 + -1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:57 2011