Locus 1895

Sequence ID dm3.chr2L
Location 14,587,778 – 14,587,890
Length 112
Max. P 0.805770
window2613

overview

Window 3

Location 14,587,778 – 14,587,890
Length 112
Sequences 3
Columns 112
Reading direction reverse
Mean pairwise identity 82.57
Shannon entropy 0.23553
G+C content 0.36474
Mean single sequence MFE -21.15
Consensus MFE -15.12
Energy contribution -15.01
Covariance contribution -0.11
Combinations/Pair 1.10
Mean z-score -2.13
Structure conservation index 0.71
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.75
SVM RNA-class probability 0.805770
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 14587778 112 - 23011544
ACAAAUCGACAACCAAUAACAUCUCGGGAACUGUGAGAGUUAGAAGGUUGAGUUUAAGCAUACAAUUGAAAAUUCUUCUUAGCACUCACUCUACCUAAAUACUUCCUGAUAG
.......................(((((((..(((((.(((((((((.....(((((........)))))...))))).)))).))))).............)))))))... ( -21.46, z-score =  -1.09, R)
>droSim1.chr2L 14338419 103 - 22036055
ACCCAAAAAUGAACGAUAACAUCUCGGGAUCUGUGAGCGCUGGAA---------UAAGAAUACAAUAUAAAAUUCUUCUUAGCACUCACUCUACUUAAGUACUACCUGAUAG
.......................(((((....(((((.(((((..---------.((((((..........)))))).))))).)))))..(((....)))...)))))... ( -20.80, z-score =  -2.55, R)
>droSec1.super_3 861033 103 - 7220098
ACCCAAAUAUGAACGAUAACAUCUCGGGAUCUGUGAGCGCUAGAA---------UAAGAAUACAAUAUAAAAUUCUUCUUAGCACUCACUCUACUUAAGUACUACCUGAUAG
.......................(((((....(((((.(((((..---------.((((((..........)))))).))))).)))))..(((....)))...)))))... ( -21.20, z-score =  -2.75, R)
>consensus
ACCCAAAAAUGAACGAUAACAUCUCGGGAUCUGUGAGCGCUAGAA_________UAAGAAUACAAUAUAAAAUUCUUCUUAGCACUCACUCUACUUAAGUACUACCUGAUAG
.......................(((((....(((((.(((((((..............................))).)))).)))))..(((....)))...)))))... (-15.12 = -15.01 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:56 2011