| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,578,497 – 14,578,582 |
| Length | 85 |
| Max. P | 0.678681 |
| Location | 14,578,497 – 14,578,582 |
|---|---|
| Length | 85 |
| Sequences | 6 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 84.31 |
| Shannon entropy | 0.30529 |
| G+C content | 0.43984 |
| Mean single sequence MFE | -10.60 |
| Consensus MFE | -8.33 |
| Energy contribution | -8.72 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678681 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14578497 85 - 23011544 UUAAACUUAAUAUACAAUUACUUCCAAUCAAGACAGUUUCGUCACACUUUGCGGCCAUAACUCAUCCGCACCGUGCCUCGUCAUC ...............................(((......))).(((..(((((...........)))))..))).......... ( -11.10, z-score = -1.68, R) >droAna3.scaffold_12916 14939856 72 + 16180835 -------------AUAAUUACUUCCAAUCAAGACGCUUUCGUCACGCUCCUCGAACCAAACCAUUCUGCACCUUGCGCCGUCAUC -------------..................(((((.((((..........))))............((.....))).))))... ( -7.60, z-score = -0.85, R) >droEre2.scaffold_4929 6333298 85 - 26641161 CUAAACUAAAUAUGCAAUUAGCUCCAAUCAAGACAAGUUCGUCACACUUUGCGGCCAUAACUCAUCCGCACCGUGCCUCGUCAUC .............((.....)).........(((......))).(((..(((((...........)))))..))).......... ( -11.60, z-score = -0.70, R) >droYak2.chr2L 14690135 85 - 22324452 UUAAACUAAAUAUACAAUUACUUCCAAUCAAGACAAGUUCGUCACACUUUGCGGCCAUAACUCAUCCGCACCGUGCCUCGUCAUC ...............................(((......))).(((..(((((...........)))))..))).......... ( -11.10, z-score = -1.70, R) >droSec1.super_3 841623 85 - 7220098 UUAAACUAAAUAUACAAUUACUACCAAUCAAGACAGUUUCGUCACACUUUGCGGCCAUAACUCAUCCGCACCGUGCCUCGUCAUC ...............................(((......))).(((..(((((...........)))))..))).......... ( -11.10, z-score = -1.54, R) >droSim1.chr2L 14328688 85 - 22036055 UUAAACUAAAUAUACAAUUACUACCAAUCAAGACAGUUUCGUCACACUUUGCGGCCAUAACUCAUCCGCACCGUGCCUCGUCAUC ...............................(((......))).(((..(((((...........)))))..))).......... ( -11.10, z-score = -1.54, R) >consensus UUAAACUAAAUAUACAAUUACUUCCAAUCAAGACAGUUUCGUCACACUUUGCGGCCAUAACUCAUCCGCACCGUGCCUCGUCAUC ...............................(((......))).(((..(((((...........)))))..))).......... ( -8.33 = -8.72 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:53 2011