| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,568,624 – 14,568,719 |
| Length | 95 |
| Max. P | 0.557448 |
| Location | 14,568,624 – 14,568,719 |
|---|---|
| Length | 95 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.47855 |
| G+C content | 0.45394 |
| Mean single sequence MFE | -20.96 |
| Consensus MFE | -12.31 |
| Energy contribution | -11.79 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.557448 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14568624 95 - 23011544 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGCCCAUAUUUUG-CGACGCUGCCAUCAACGUCUUGAAAUCCCGCCACC----------------------- (((((((.(((((((......)))))))...........(((((..((((.........)-))).)))))...)))))))................----------------------- ( -18.90, z-score = -1.24, R) >droSim1.chr2L 14318965 95 - 22036055 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGCCCAUAUUUUG-CGACGCUGCCAUCAACGUCUUGAAAUCCCGCCACC----------------------- (((((((.(((((((......)))))))...........(((((..((((.........)-))).)))))...)))))))................----------------------- ( -18.90, z-score = -1.24, R) >droSec1.super_3 831706 95 - 7220098 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGCCCAUAUUUUG-CGACGCUGCCAUCAACGUCUUGAAAUCCCGCCACC----------------------- (((((((.(((((((......)))))))...........(((((..((((.........)-))).)))))...)))))))................----------------------- ( -18.90, z-score = -1.24, R) >droAna3.scaffold_12916 14930523 95 + 16180835 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGCCUAUAUUUUG-CGACGUCGGCAUCAUCGUGGCGAAGUCUCUCUGCC----------------------- (((((((((((((((......))))))).(((((.....)))))...............)-)))))))((((.....(.(((...))).)..))))----------------------- ( -22.30, z-score = -0.42, R) >droEre2.scaffold_4929 6324084 95 - 26641161 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUGGCAGCCUUUGCCCAUAUUUUG-CGACGCUGCCAUCAACGUCUUCAAAUCCCGCCACC----------------------- (((((((.(((((((......))))))).........(((((((..((((.........)-))).))))))).)))))))................----------------------- ( -23.70, z-score = -2.38, R) >droYak2.chr2L 14680115 95 - 22324452 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGCCCAUAUUUUG-CGACGCUGCCAUCAACGUCUUGAAAUCCCGCCACC----------------------- (((((((.(((((((......)))))))...........(((((..((((.........)-))).)))))...)))))))................----------------------- ( -18.90, z-score = -1.24, R) >droPer1.super_5 1944366 118 - 6813705 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGGCCAUAUUUCUGCGACGUUGCCAUCAUCGUCAUGGCUGGCUCCUCGAGCG-CCCCCCCCCACUCGCCCCA ...((.(((((((((......)))))).))).))((((((.((((...((((((........((((.((....)).))))))))))))))...))))))-................... ( -27.40, z-score = -0.36, R) >dp4.chr4_group1 2000522 119 + 5278887 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGGCCAUAUUUCUGCGACGUUGCCAUCAUCGUCAUGGCUGGCUCCUCGAGCGCCCCCCCCCCACUCGCCCCA ...((.(((((((((......)))))).))).))((((((.((((...((((((........((((.((....)).))))))))))))))...)))))).................... ( -27.40, z-score = -0.53, R) >droWil1.scaffold_180764 2910162 82 - 3949147 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGGCCAUAUUUUGCCCAUGUUGCCAUUCCUCCUCU------------------------------------- ...((.(((((((((......)))))).))).)).....(((((...(((.((.....)).))).)))))............------------------------------------- ( -13.90, z-score = -0.52, R) >droVir3.scaffold_12723 3195042 74 + 5802038 GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGC-UGCAGCCUGUGGCCAUAUAU-UGCGAGGUC-UUGUCCUC------------------------------------------ (((.(((((((((((......)))))))(((.(((((-........))))).)))...-.)))).)))-........------------------------------------------ ( -19.30, z-score = -1.50, R) >consensus GAUGUUGCAUAUAAUUAAUUUAUUAUGUUGUUGCCGCUUGCAGCCUUUGCCCAUAUUUUG_CGACGCUGCCAUCAACGUCUUGAAAUCCCGCCACC_______________________ ((((..(((((((((......))))))).(((((.....))))).....................))...))))............................................. (-12.31 = -11.79 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:52 2011