| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,554,448 – 14,554,538 |
| Length | 90 |
| Max. P | 0.626097 |
| Location | 14,554,448 – 14,554,538 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.12 |
| Shannon entropy | 0.45686 |
| G+C content | 0.37406 |
| Mean single sequence MFE | -15.58 |
| Consensus MFE | -14.41 |
| Energy contribution | -14.05 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.18 |
| Mean z-score | -0.34 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626097 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14554448 90 - 23011544 UCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUU---CCUUCGUUUUGU--------------------- ....(((.(((..(((((((........)))))))..))).)))((((....))))......................---............--------------------- ( -14.50, z-score = -0.31, R) >droPer1.super_5 1927661 79 - 6813705 UCGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUAUUUUCUAAUUUUUUGU----------------------------------- ....(((.(((..(((((((........)))))))..))).)))((((....)))).......................----------------------------------- ( -14.50, z-score = -0.37, R) >dp4.chr4_group1 1983850 79 + 5278887 UCGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUAUUUUCUAAUUUUUUGU----------------------------------- ....(((.(((..(((((((........)))))))..))).)))((((....)))).......................----------------------------------- ( -14.50, z-score = -0.37, R) >droAna3.scaffold_12916 14917325 114 + 16180835 CCGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUAUUCCGUACUUUUUUCCUCUUUUCGGCGUCGGCCUCGGCUUCGGCUUGUGUU ....(((.(((..(((((((........)))))))..))).)))((((....))))(((((.........................(((....)))..(((....)))))))). ( -27.50, z-score = -1.12, R) >droEre2.scaffold_4929 6309725 78 - 26641161 UCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACCCUCUAAUUUUUCU------------------------------------ ....(((.(((..(((((((........)))))))..))).)))((((....))))......................------------------------------------ ( -14.50, z-score = -1.03, R) >droYak2.chr2L 14665416 93 - 22324452 UCACUCGUUCGUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUUCCCCCCUCGCCGCGU--------------------- ....(((.(((..(((((((........)))))))..))).)))((((....)))).....................................--------------------- ( -13.80, z-score = -0.11, R) >droSec1.super_3 817796 90 - 7220098 UCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUU---CCCUCGUUUUGU--------------------- ....(((.(((..(((((((........)))))))..))).)))((((....))))......................---............--------------------- ( -14.50, z-score = -0.36, R) >droSim1.chr2L 14304881 90 - 22036055 UCACUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUACUCUCUAAUUUUUUU---CCCUCGUUUUGU--------------------- ....(((.(((..(((((((........)))))))..))).)))((((....))))......................---............--------------------- ( -14.50, z-score = -0.36, R) >droWil1.scaffold_180764 2886566 95 - 3949147 UUGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCGCUUGAUUGAUGACUCCUGUCAACACAUAUUUUCUAAUUUUUUUCUUUUCUGUCUACCUCC------------------- ....(((.(((..(((((((........)))))))..))).)))((((....)))).......................................------------------- ( -13.80, z-score = -1.05, R) >droMoj3.scaffold_6500 16516136 109 + 32352404 CGGCUCGUUUAUUUGACAUGUCAAAAGUUGUGUCGCUUGAUUGAUGACUGCUGUCAACACAUAUUUUCUAAUUUUUUUUUUUUUUUCCAACUUCUCUUCUCUGUAGACA----- ......((((((((((....))))((((((.(((....)))((.((((....)))).))............................)))))).........)))))).----- ( -13.60, z-score = 0.69, R) >droGri2.scaffold_15126 918230 98 - 8399593 UAGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCGCUUGAUUGAUGACUGCUGUCAACACAUAUUCUCUAAUUUUUUUUCAAACUGUGUCUGUGUCUG---------------- ....(((.(((..(((((((........)))))))..))).)))((((....))))(((((.((.(...................).)).)))))...---------------- ( -15.71, z-score = 0.60, R) >consensus UCGCUCGUUCAUUUGACAUGUCAAAAGUUGUGUCACUUGAUUGAUGACUGCUGUCAACACAUAUUCUCUAAUUUUUUU___CCCUCG_U_UGU_____________________ ....(((.(((..(((((((........)))))))..))).)))((((....)))).......................................................... (-14.41 = -14.05 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:50 2011