| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,544,228 – 14,544,320 |
| Length | 92 |
| Max. P | 0.794813 |
| Location | 14,544,228 – 14,544,320 |
|---|---|
| Length | 92 |
| Sequences | 7 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 68.52 |
| Shannon entropy | 0.57871 |
| G+C content | 0.49781 |
| Mean single sequence MFE | -28.99 |
| Consensus MFE | -11.91 |
| Energy contribution | -12.53 |
| Covariance contribution | 0.62 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.794813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14544228 92 - 23011544 GGAGUG-CAGACAAAAUAUAUAUCU------UUUCUGCUGAAUUUGGGGUAGAAUUCUACCGGGGCCAAAAGGGGCUUCGGGCUUUGGGCUUUGCGCUC .(((((-((((((((..........------.(((((((........))))))).....((((((((......))))))))..))))...))))))))) ( -32.10, z-score = -2.55, R) >droSim1.chr2L 14293092 91 - 22036055 GGAGUG-CAGACAAAAUAUAUAUCU------UUUCUGCUGAAUUUGGGGUAGAAUUCUACAGGGGCC-AAAGGGGCUUCGGGCUUUGGGCUUUGCGCUC .(((((-((((..............------.(((((..((((((......))))))..)))))(((-..((((.(....).)))).)))))))))))) ( -29.60, z-score = -2.18, R) >droSec1.super_3 807661 91 - 7220098 GGAGUG-CAGACAAAAUAUAUAUCU------UUUCUGCUGAAUUUGGGGUAGAAUUCUACCGGGGCC-AAAGGGGCUUCGGGCUUUGGGCUUUGCGCUC .(((((-((((((((..........------.(((((((........))))))).....((((((((-.....))))))))..))))...))))))))) ( -31.90, z-score = -2.51, R) >droYak2.chr2L 14654934 81 - 22324452 GGAGUG-CAGACAAAAUAUAUAUCU------UUUCUGCUGAA-CUGGGGUAGAAUGGUACCGGGG----------CUUUGGGCUUUGGGCUUUGCACUA ..((((-(((((........((((.------.(((((((...-....))))))).))))((((((----------(.....)))))))).)))))))). ( -27.00, z-score = -2.81, R) >droEre2.scaffold_4929 6300081 79 - 26641161 GGAGUG-CAGACAAAAUAUAUAUCU------UUUCUGCUGAA-UUGGGGUAGAAUUGUUUGGG------------CCUUGGGCUUUGGGCUUUGCGCUC .(((((-((((..............------.(((((((...-....)))))))..(((..((------------((...))).)..)))))))))))) ( -23.40, z-score = -1.70, R) >dp4.chr4_group1 1971677 96 + 5278887 GGACUGCCAGACAAAAUAUAUCUUUGCAGCAAUUCUCCCUGAAUCGGGGUAGCACCACUCCUGACUUAUGGGGGA-GGGGGGCAUAU-GGGGGGCAAC- ....((((............(((.(((..(..((((((((((.(((((((......)).))))).))).))))))-)..).)))...-))).))))..- ( -28.62, z-score = -0.01, R) >droPer1.super_5 1915560 98 - 6813705 GGACUGCCAGACAAAAUAUAUCUUUGCAGCAAUUCUCCCUGAAUCGGGGUAGCACCACUCCUGACUUAUGGGGGAGGGGGGGCAUAUGGGGGGGUAGC- ...(((((...(....((((....(((..(..((((((((((.(((((((......)).))))).))).)))))))..)..))))))).)..))))).- ( -30.30, z-score = 0.12, R) >consensus GGAGUG_CAGACAAAAUAUAUAUCU______UUUCUGCUGAAUUUGGGGUAGAAUUCUACCGGGGCC_AAAGGGGCUUCGGGCUUUGGGCUUUGCGCUC ..((((.((((.....................(((((((........))))))).....(((..(((......)))..))).........)))))))). (-11.91 = -12.53 + 0.62)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:49 2011