| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,541,129 – 14,541,234 |
| Length | 105 |
| Max. P | 0.873378 |
| Location | 14,541,129 – 14,541,234 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 65.97 |
| Shannon entropy | 0.68353 |
| G+C content | 0.42273 |
| Mean single sequence MFE | -25.92 |
| Consensus MFE | -12.35 |
| Energy contribution | -13.13 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.873378 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14541129 105 + 23011544 UGGCAAAAGUAUUUUGUG-GACAACUGAGUGGCAAUAGCUUGAGGGUUGAUGGGUUAAUUCUUGAGAACUCGAAAAGGGUUGGCCAACUCAAGCUGAGAUAAUUCU .(((.........(((..-..))).((((((((.....((..((((((((....))))))))..))(((((.....))))).))).))))).)))........... ( -27.90, z-score = -1.38, R) >droSim1.chr2L 14290051 105 + 22036055 CGGCAUAAGUAUUUUGUG-GACAACUGAGUGGCAAUAGCUUGAGGGUUGAUGGGUUAAUUCUUGGGAACUCGAAAAGGGUUGGCCAACUCAAGCUGAGAUAAUUCU ((((.........(((..-..))).((((((((.....((..((((((((....))))))))..))(((((.....))))).))).))))).)))).......... ( -30.00, z-score = -2.00, R) >droSec1.super_3 804622 105 + 7220098 CGGCAGAAGUAUUUUGUG-GACAACUGAGUGGCAAUAGCUUGAGGGUUGAUGGGUUAAUUCUUGGGAACUCGAAAAGGGUUGGCCAACUCAAGCUGAGAUAAGUCU ((((.........(((..-..))).((((((((.....((..((((((((....))))))))..))(((((.....))))).))).))))).)))).......... ( -30.00, z-score = -1.66, R) >droYak2.chr2L 14651756 106 + 22324452 UCUUAGAAGUAUUUUUGGUGAGGACGGAAUGGCUUGAGCUUGAGGGUUGAUGGGUUAAUUCUUGGGAACUCGCAAAGGGUUGGCCAACUCAAGCAAAUAUAAGCCU (((((..((.....))..))))).......((((((.(((((((........((((((((((((.(....).).)))))))))))..))))))).....)))))). ( -29.30, z-score = -1.00, R) >droEre2.scaffold_4929 6297192 86 + 26641161 GUACAGAAGUAUCUUGUGGAACAACUGAGUGGCC-AAACUGGAGGGUUGAUGGGUUAAUUCCUGGAAACCCGAAAAGGGUUGGCCCA------------------- ...(((..((.((....)).))..))).(.((((-((.((...(((((..((((......))))..)))))....))..))))))).------------------- ( -28.20, z-score = -1.43, R) >droWil1.scaffold_180764 2868145 93 + 3949147 -----GAAUUAAUUAAUU-GAAAAC-AAUUGAAACAUUUUUGAAAACUAAUUUCUGAGAUUUCUG---UUCUAUAUAAGUCAGGCAAUGAAUCCAGCGAGGGU--- -----.......((((((-(....)-)))))).............(((.....(((.(((((.((---((..((....))..))))..))))))))....)))--- ( -10.10, z-score = 1.47, R) >consensus CGGCAGAAGUAUUUUGUG_GACAACUGAGUGGCAAUAGCUUGAGGGUUGAUGGGUUAAUUCUUGGGAACUCGAAAAGGGUUGGCCAACUCAAGCUGAGAUAAUUCU .............................((((.....((((((((((((....))))))))))))(((((.....))))).)))).................... (-12.35 = -13.13 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:48 2011