| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,540,814 – 14,540,904 |
| Length | 90 |
| Max. P | 0.880228 |
| Location | 14,540,814 – 14,540,904 |
|---|---|
| Length | 90 |
| Sequences | 11 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Shannon entropy | 0.37620 |
| G+C content | 0.47654 |
| Mean single sequence MFE | -28.38 |
| Consensus MFE | -18.86 |
| Energy contribution | -18.35 |
| Covariance contribution | -0.52 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.880228 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14540814 90 + 23011544 ------------------------ACGCUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUU ------------------------....((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).)))))))))))..... ( -27.60, z-score = -1.98, R) >droSim1.chr2L 14289736 90 + 22036055 ------------------------ACGCUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUU ------------------------....((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).)))))))))))..... ( -27.60, z-score = -1.98, R) >droSec1.super_3 804307 90 + 7220098 ------------------------ACGCUGUUGUGGUCACUUUGAUCGAUGGGACCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUU ------------------------....((((((((((.......(((........)))(((((....))).))....((((((((....).)))))))))))))))))..... ( -26.40, z-score = -1.96, R) >droYak2.chr2L 14651429 90 + 22324452 ------------------------GCGCUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGCCAUGGACUUUGUUGACCGCAACAAUAUU ------------------------....((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).)))))))))))..... ( -27.60, z-score = -1.63, R) >droEre2.scaffold_4929 6296896 89 + 26641161 -------------------------CGCUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCGGCAAUUAAUAAAGCCAUGGACUUUGUUGGCCGCAACAAUAUU -------------------------...((((((((((((...(.((.((((((.....))(((....)))..............)))).)))...).)))))))))))..... ( -27.00, z-score = -0.82, R) >droAna3.scaffold_12916 14903632 90 - 16180835 ------------------------CCGCUGUUGUGGUCAUUUUGAUGGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAAUAUU ------------------------....((((((((((.......(((.......))).(((((....))).))....(((((((((...)))))))))))))))))))..... ( -28.00, z-score = -1.95, R) >droPer1.super_5 1911055 94 + 6813705 ------------------GCGGGGACUCUGUUGCGGUCAGUUUGAUUGAUGAGCCCAGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAUCGAGA-- ------------------((((.(.(((((..((.((((((...))))))..)).))))))(((....))).....(((((((((((...))))))))))))))).......-- ( -30.10, z-score = -1.45, R) >droWil1.scaffold_180764 2867812 89 + 3949147 -------------------------UCGCCAUGCGGUCAGUUUGAUUGAUGAGCCCAAAGCGCUCAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGCUGACCGCAAUCAUACA -------------------------......(((((((((((((((((((((((.......))))))......))))))).((((((...))))))))))))))))........ ( -30.30, z-score = -3.01, R) >droVir3.scaffold_12723 3164453 92 - 5802038 ----------------------GCUUCGACCCGACGUCGCUUUGAUUAAUGAGCCUGGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAACGCU ----------------------((((((((.....)))((((........))))..)))))(((....))).((..(((((((((((...)))))))))))..))......... ( -26.20, z-score = -1.80, R) >droMoj3.scaffold_6500 16497601 110 - 32352404 GACGCCGAUGCCGACGUCGACGCGGCGGCUCUGCGGUCACAUUGAUUAAUGAGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAA---- ...((((..((((.((....))))))(((((...((((.....))))...))))).)).))(((....))).((..(((((((((((...)))))))))))..)).....---- ( -38.10, z-score = -1.96, R) >droGri2.scaffold_15126 896631 89 + 8399593 ------------------------GCCACGUUGCGCUCAAUUUGAUUGAUGAGCCCCUAGCGCUAAUGAGCUGCAAUUAAUAAAGUCAUGGACUUUGCUGACCGCAACAAUGU- ------------------------.....((((((.(((..(((((((....((.....))(((....)))..)))))))(((((((...))))))).))).)))))).....- ( -23.30, z-score = -1.40, R) >consensus ________________________ACGCUGUUGUGGUCACUUUGAUCGAUGGGCCCCGAGCGCUAAUGAGCAGCAAUUAAUAAAGUCAUGGACUUUGUUGACCGCAACAAUAUU ...............................((((((((......((.((((((.....))(((....)))..............)))).))......))))))))........ (-18.86 = -18.35 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:47 2011