| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,529,030 – 14,529,122 |
| Length | 92 |
| Max. P | 0.747381 |
| Location | 14,529,030 – 14,529,122 |
|---|---|
| Length | 92 |
| Sequences | 8 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 86.48 |
| Shannon entropy | 0.26593 |
| G+C content | 0.43118 |
| Mean single sequence MFE | -23.78 |
| Consensus MFE | -18.05 |
| Energy contribution | -17.84 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.71 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.747381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14529030 92 - 23011544 CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGCGCUC--------GUUCGGAGGUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((..(((.(--------(..(....)..)))))..)).)))))....)))))).))))).............. ( -27.00, z-score = -2.38, R) >droWil1.scaffold_180764 2850485 80 - 3949147 CUUUGGGCGUGUGUGUG-UGUGUUUG-GGUAU------------------AUGUUCAGCAUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG (((((.((((((((..(-..(((...-...))------------------)..)...))))))))...((((((.(((....)))....))))))))))) ( -16.40, z-score = -0.46, R) >droAna3.scaffold_12916 14891218 91 + 16180835 CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGUGUUC--------GUUCGGA-GUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((..(((.(--------(......-...)))))..)).)))))....)))))).))))).............. ( -20.50, z-score = -1.17, R) >droEre2.scaffold_4929 6285233 92 - 26641161 CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGCGCUC--------GUUCGGAGGUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((..(((.(--------(..(....)..)))))..)).)))))....)))))).))))).............. ( -27.00, z-score = -2.38, R) >droYak2.chr2L 14639109 100 - 22324452 CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGUGCUCGUUCGGAGGUUCGGAGGUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((..(((((.(((((....))))).)...))))..)).)))))....)))))).))))).............. ( -27.00, z-score = -1.79, R) >droSec1.super_3 792610 92 - 7220098 CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGCGCUC--------GUUCGGAGGUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((..(((.(--------(..(....)..)))))..)).)))))....)))))).))))).............. ( -27.00, z-score = -2.38, R) >droSim1.chr2L 14277620 92 - 22036055 CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGCGCUC--------GUUCGGAGGUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((..(((.(--------(..(....)..)))))..)).)))))....)))))).))))).............. ( -27.00, z-score = -2.38, R) >droPer1.super_5 1896964 85 - 6813705 CUUUCAGUGUCAGCAUGUUGUAGCUG-UGCCUGU----------GUCU----GUUCAGCAUGCGUGUUGCUUUCCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(.(((.(-..(.(((----------(.((----....)))))).)..).))))..)))))).))))).............. ( -18.30, z-score = -0.79, R) >consensus CUUUCAGUGUCAGCAUGUUGUAGCUGUUGUGCGCUC________GUUCGGAGGUUCGGCGUGCGUGUUGCUUUUCAUGUUUACAUUAAUAAAAGUCAAAG .....(((((.((((((..(((((...((((((((.....................)))))))).)))))....)))))).))))).............. (-18.05 = -17.84 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:38 2011