| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,522,767 – 14,522,857 |
| Length | 90 |
| Max. P | 0.998335 |
| Location | 14,522,767 – 14,522,857 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 74.31 |
| Shannon entropy | 0.43012 |
| G+C content | 0.61051 |
| Mean single sequence MFE | -34.64 |
| Consensus MFE | -22.98 |
| Energy contribution | -23.34 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.35 |
| Mean z-score | -2.99 |
| Structure conservation index | 0.66 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.33 |
| SVM RNA-class probability | 0.998335 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14522767 90 + 23011544 CGCUGACUCUGGACUCCCGACUC-------CCGACUCCGGUUUCCUUACUCUGAUCCCAAACGAAGCCCCCGACCGCUGGGUUUCUGGAGUCAGCAC------ .((((((((..((..(((.....-------........((..((........))..))......(((........))))))..))..))))))))..------ ( -32.60, z-score = -3.24, R) >droEre2.scaffold_4929 6280031 85 + 26641161 CGCUGACUCCGGGCUCCCGACUU-------CCAACUGGCAACUCCUUACUCU----CCUUACUCUGAUCCCGACCGCUGGGAUCCUGGAGUGGGCG------- ((((.(((((((......((.((-------((....)).)).))........----.........(((((((.....)))))))))))))).))))------- ( -29.20, z-score = -2.53, R) >droYak2.chr2L 14633095 103 + 22324452 CGCUGACUCCGGGCUCCCGACUCCCGACUCUCGACUCCCAACUUCAUGCUCUGAUCCCAAGUAAGGCCCCCGACCGCUGGGAUUCUGGAGUCUGGAGUCAGGC ..(((((((((((((((.((.(((((.(..(((...((..((((((.....))).....)))..))....)))..).))))).)).))))))))))))))).. ( -43.20, z-score = -2.83, R) >droSec1.super_3 785974 90 + 7220098 CGCUGACUCUGGACUCCCGACUC-------CCAACUCCGGUUUCCUUACUCUGAUCUCAAGCGAAGCCCACGACCGCUGGGUUUCUGGAGUCAGCAC------ .((((((((((((..((.((...-------.....)).))..))).................(((((((((....).)))))))).)))))))))..------ ( -34.00, z-score = -3.42, R) >droSim1.chr2L 14271238 97 + 22036055 CGCUGACUCUGGACUCCCGACUCUCAACUCCCAACUCCGGUUUCCUUACUCUGAUCCCAAGCGCAGUGCCCGACCGCUGGGUUUCUGGAGUCAGCAC------ .((((((((..((..(((....................((..((........))..)).((((..((.....)))))))))..))..))))))))..------ ( -34.20, z-score = -2.94, R) >consensus CGCUGACUCUGGACUCCCGACUC_______CCAACUCCGGUUUCCUUACUCUGAUCCCAAGCGAAGCCCCCGACCGCUGGGUUUCUGGAGUCAGCAC______ .((((((((((((..(((............((......))........................(((........))))))..))))))))))))........ (-22.98 = -23.34 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:37 2011