| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,515,993 – 14,516,091 |
| Length | 98 |
| Max. P | 0.641888 |
| Location | 14,515,993 – 14,516,091 |
|---|---|
| Length | 98 |
| Sequences | 12 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 80.60 |
| Shannon entropy | 0.41268 |
| G+C content | 0.49487 |
| Mean single sequence MFE | -32.92 |
| Consensus MFE | -14.21 |
| Energy contribution | -13.78 |
| Covariance contribution | -0.43 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.641888 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14515993 98 + 23011544 -----AACUGUCCGUGGUGUGGCCUCCUUUAAUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC-ACCAC---CGACAGAGUC------ -----..(((((.(((((((.(((.....((((...(((((((.....((((........)))).....))))))).)))).))).))-)))))---.)))))....------ ( -39.80, z-score = -4.29, R) >droSim1.chr2L 14263882 98 + 22036055 -----AACUGUCCGUGGUGUGGCCUCCUUUAAUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC-ACCAC---CGACAGAGUC------ -----..(((((.(((((((.(((.....((((...(((((((.....((((........)))).....))))))).)))).))).))-)))))---.)))))....------ ( -39.80, z-score = -4.29, R) >droSec1.super_3 779132 98 + 7220098 -----AACUGUCCGUGGUGUGGCCUCCUUUAAUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC-ACCAC---CGACAGAGUC------ -----..(((((.(((((((.(((.....((((...(((((((.....((((........)))).....))))))).)))).))).))-)))))---.)))))....------ ( -39.80, z-score = -4.29, R) >droYak2.chr2L 14625398 98 + 22324452 -----AACUGUCCGUGGUGUGGCCUCCUUUAAUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC-ACCAC---CGACAGAGUC------ -----..(((((.(((((((.(((.....((((...(((((((.....((((........)))).....))))))).)))).))).))-)))))---.)))))....------ ( -39.80, z-score = -4.29, R) >droEre2.scaffold_4929 6270111 98 + 26641161 -----AACUGUCCGUGGUGUGGCCUCCUUUAAUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC-ACCAC---CGACAGAGUC------ -----..(((((.(((((((.(((.....((((...(((((((.....((((........)))).....))))))).)))).))).))-)))))---.)))))....------ ( -39.80, z-score = -4.29, R) >droAna3.scaffold_12916 14879858 98 - 16180835 -----AACUGUCCGUGGUGUGGCCUCCUUUAGUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC-ACCAC---CGACAGAGUC------ -----..(((((.(((((((.(((.......((...(((((((.....((((........)))).....)))))))....))))).))-)))))---.)))))....------ ( -40.11, z-score = -4.08, R) >dp4.chr4_group1 1937142 102 - 5278887 -----AACUGUCCAUG--GUGGCCUCCUUUAGUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGCAGCCAC----CACACCGCCCGAGUC -----.........((--(((((..((....((...(((((((.....((((........)))).....)))))))....))...))..)))))----))............. ( -29.90, z-score = -0.49, R) >droPer1.super_5 1881675 102 + 6813705 -----AACUGUCCAUG--GUGGCCUCCUUUAGUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGCAGCCAC----CACACCGCCCGAGUC -----.........((--(((((..((....((...(((((((.....((((........)))).....)))))))....))...))..)))))----))............. ( -29.90, z-score = -0.49, R) >droWil1.scaffold_180764 2835630 106 + 3949147 --CAGAACUGUCCAUG--GUGGCCUCCUUUAGUUUUGCGGUCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGGCAUGGCUUC--GCGUCAUCGUCAUCGU- --((((((((.....(--(......))..)))))))).(((.(((((.((((........))))....))))).)))...(((((((((((...--..))))).)))..)))- ( -24.90, z-score = 0.60, R) >droMoj3.scaffold_6500 16464864 87 - 32352404 -----------------GGUGGCCUCCUUUAGUUUUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUUCCAUUGC-GCCGG-AUCUCUACAGACGCAUU------- -----------------(((((((..............)))))))...((((........))))...............(((-((.(.-.......).).))))..------- ( -18.44, z-score = 0.21, R) >droGri2.scaffold_15126 858342 112 + 8399593 GAUGCUGAUGUUGAUGUUGUGGCCUCCUUUAGUUUUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGGCAUUGCAGCCGCCACCGCGCUCCACACU-CCCUAGUC (((...(((((.(((((.(((((...............(((((.....((((........)))).....)))))(((......)))))))).))).)).))).)-)....))) ( -27.70, z-score = 0.25, R) >droVir3.scaffold_12723 3138794 96 - 5802038 ------GGCGUUUCGAUGGUGGCCUCCUUUAGUUUUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUUCCAUUGC-GCUGC-AUCC--ACAGACGCAUU------- ------((....((((((((((((..............))))))))..((((........))))....))))...))..(((-((((.-....--.))).))))..------- ( -25.14, z-score = -0.53, R) >consensus _____AACUGUCCGUGGUGUGGCCUCCUUUAGUUCUGCGGCCAUCAAUUUGCUUUUAAAUGCAACAAUUUGGUUGCCAUUGCGGCGGC_ACCAC___CGACAGAGUC______ ..................((((((..............))))))....((((........))))......(((.((..........)).)))..................... (-14.21 = -13.78 + -0.43)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:33 2011