| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,502,404 – 14,502,500 |
| Length | 96 |
| Max. P | 0.796470 |
| Location | 14,502,404 – 14,502,500 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 73.32 |
| Shannon entropy | 0.56681 |
| G+C content | 0.47920 |
| Mean single sequence MFE | -22.70 |
| Consensus MFE | -11.95 |
| Energy contribution | -12.52 |
| Covariance contribution | 0.57 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14502404 96 + 23011544 UCCGCUACUUUGGCAGUGGCACUC--UUCUCGUGGCCAUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGCCUGUCACUCAUGUCUCUAC--UGG-UCGC-------- ...((((((.....))))))....--.....(((((((........(((((..........)-))))((..((.((.....)).))..))..--)))-))))-------- ( -20.60, z-score = -0.31, R) >droSim1.chr2L 14249647 96 + 22036055 UCCGCCACUUUGGCAGUGGCACUC--UUCUCUUGGCCAUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGCCUGUCACUCAUGUCUCUUC--UGG-UCGC-------- ...((((((.....))))))....--.......(((((........(((((..........)-))))((..((.((.....)).))..))..--)))-))..-------- ( -19.80, z-score = -0.38, R) >droSec1.super_3 765629 96 + 7220098 UCCGCCACUUUGGCAGUGGCACUC--UUCUCUUGGCCAUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGCCUGUCACUCAUGUCUCUUC--UGG-UCGC-------- ...((((((.....))))))....--.......(((((........(((((..........)-))))((..((.((.....)).))..))..--)))-))..-------- ( -19.80, z-score = -0.38, R) >droYak2.chr2L 14611163 103 + 22324452 UCCGCCACUUUGGCAGUGGCACUC--UUCUCUUGGCCAUUUAAUCACAGCAUUAACUCUUUU-GCCGAGCCGCCUGUCACUCAUGUCCACAAAACGGACUGGACGC---- ((((((.....)))(((((((...--....((((((...(((((......))))).......-)))))).....)))))))...((((.......)))).)))...---- ( -25.20, z-score = -0.87, R) >droEre2.scaffold_4929 6256917 78 + 26641161 -------------------UCCUC--UUCUCUUGGCCAUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGCCUGUCACUCAUGUCUCUUC--UGGCUCGC-------- -------------------.....--.....................((((..........)-)))((((((...(..((....))..)...--))))))..-------- ( -10.50, z-score = -0.09, R) >droAna3.scaffold_12916 14864710 102 - 16180835 UCGGCAGCUCUGACAGUGGCACUC--UUCUCUUGGCCGUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGCCUGUCACUCAUUUAGCUGUC-CAAACGGGCAGC---- ..........((((((((((....--......(((........)))(((((..........)-)))).)))).))))))........((((((-(....)))))))---- ( -28.30, z-score = -0.93, R) >dp4.chr4_group1 1910176 102 - 5278887 UCCAUCGGCCUGACAGUGGCACUCACUUCUCUUGGCCAUUUAAUCACAGUAUUAACUCUUUUUGCUGAGCCGCCUGUCACUCAUGUCUCAUGAA-GUGGUGCC------- ......((((((((((((((.....((......))...........(((((...........))))).)))).)))))(((((((...)))).)-)))).)))------- ( -24.20, z-score = -0.40, R) >droPer1.super_5 1849186 102 + 6813705 UCCAUCGGCCUGACAGUGGCACUCACUUCUCUUGGCCAUUUAAUCACAGUAUUAACUCUUUUUGCUGAGCCGCCUGUCACUCAUGUCUCAUGAA-GUGGUGCC------- ......((((((((((((((.....((......))...........(((((...........))))).)))).)))))(((((((...)))).)-)))).)))------- ( -24.20, z-score = -0.40, R) >droWil1.scaffold_180764 1130055 103 - 3949147 UCUAGUUGUCUGACAGUGGCACUC-----UCUUGGUCAUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGC-UGUCACUCUUGUCUCAUUUUUGUGGCCAUUGCCGGU .......(..((((((((((....-----...((((......))))(((((..........)-)))).)))))-)))))..)..............((((....)))).. ( -26.90, z-score = -1.79, R) >droVir3.scaffold_12723 3124384 86 - 5802038 --------UCUGACAGUGGCACUC-----UUCUGGUCAUUUAAUCACAGUAUUAACUCUUUC-GCUGAGCCGC-UGUCAGUCUUGUCUCAUUUUUGCCGAG--------- --------.(((((((((((....-----...((((......))))((((............-)))).)))))-)))))).((((.(........).))))--------- ( -24.30, z-score = -2.84, R) >droMoj3.scaffold_6500 16442082 95 - 32352404 --------UCUGACAGUGGCACUC-----UUCUGGUCAUUUAAUCACAGUAUUAACUCUUUC-GCUGAGCCGC-UGUCAGUCUUGUCUCAUUUUUGUUUUAUUUGCCGAG --------.(((((((((((....-----...((((......))))((((............-)))).)))))-)))))).............................. ( -23.40, z-score = -2.42, R) >droGri2.scaffold_15126 839286 84 + 8399593 --------UCUGACAGUGGCACUC-----UGGCGGUCAUUUAAUCACAGUAUUAACUCUUUU-GCUGAGCCGC-UGUCAGUCUUGUCUCAUUUUUGUUG----------- --------.(((((((((((....-----....(((......))).(((((..........)-)))).)))))-))))))...................----------- ( -25.20, z-score = -3.05, R) >consensus UCCGCC_CUCUGACAGUGGCACUC__UUCUCUUGGCCAUUUAAUCACAGUAUUAACUCUUUU_GCUGAGCCGCCUGUCACUCAUGUCUCAUU__UGG_GCGC________ ..........((((((((((............(((........)))((((.............)))).))))).)))))............................... (-11.95 = -12.52 + 0.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:27 2011