| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,307,051 – 1,307,155 |
| Length | 104 |
| Max. P | 0.879508 |
| Location | 1,307,051 – 1,307,155 |
|---|---|
| Length | 104 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.97 |
| Shannon entropy | 0.18561 |
| G+C content | 0.37155 |
| Mean single sequence MFE | -25.13 |
| Consensus MFE | -17.77 |
| Energy contribution | -17.77 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.51 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1307051 104 - 23011544 CGGGAAGGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCG------------- ((((((((((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -26.70, z-score = -2.28, R) >droSim1.chr2L 1278543 104 - 22036055 CGGGAAGGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCG------------- ((((((((((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -26.70, z-score = -2.28, R) >droSec1.super_14 1256706 104 - 2068291 CGGGAAAGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCG------------- ((((((((((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -27.20, z-score = -2.91, R) >droEre2.scaffold_4929 1345751 103 - 26641161 CGGGAAAGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUU-CCGUACGGCG------------- ((((((.(((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))-))).......------------- ( -23.40, z-score = -1.71, R) >droYak2.chr2L 1282954 104 - 22324452 CGGGAAAGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCG------------- ((((((((((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -27.20, z-score = -2.91, R) >droAna3.scaffold_12916 4770544 104 - 16180835 CGGGAAAGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCG------------- ((((((((((---.......)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -27.20, z-score = -2.91, R) >dp4.chr4_group3 9795615 107 - 11692001 CGGGAAAGCGCACAAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCU------------- ((((((((((..........)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -25.80, z-score = -2.43, R) >droPer1.super_8 996510 107 - 3966273 CGGGAAAGCGCACAAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCU------------- ((((((((((..........)))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))).......------------- ( -25.80, z-score = -2.43, R) >droWil1.scaffold_180708 2944167 117 - 12563649 CGGGAAAGCG---AAAAAUUCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCUUAGCACCCAGGACUUGCUGCC .(((((((((---(.....))))...((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))(((((.........))))).. ( -27.00, z-score = -2.00, R) >droMoj3.scaffold_6500 28696876 98 + 32352404 ----GAAGCG---AAAAGCCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGACCCAG--------------- ----...((.---....)).((.(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))).))......--------------- ( -20.30, z-score = -2.90, R) >droVir3.scaffold_12963 7249010 96 - 20206255 ------AGCG---AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGGCCCAG--------------- ------....---......(((.(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))).))).....--------------- ( -21.90, z-score = -3.15, R) >droGri2.scaffold_15252 10387327 103 - 17193109 CGGUAAAGCG--CAAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCGGCCCAG--------------- (((....(((--........)))(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..))))))))))))......--------------- ( -22.40, z-score = -2.17, R) >consensus CGGGAAAGCG___AAAAACCCGCAAAUGAAAUGAAACGAAAUGUUUGCAUAAACGAUUUAAUCGAAUUCCAAUGCAAAUUCAGUUAAAUUUCAUUUCCCGUACGGCG_____________ .......(((..........)))(((((((((..(((.....((((((((....(((((....)))))...))))))))...)))..)))))))))........................ (-17.77 = -17.77 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:17 2011