| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,488,105 – 14,488,197 |
| Length | 92 |
| Max. P | 0.547746 |
| Location | 14,488,105 – 14,488,197 |
|---|---|
| Length | 92 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 68.72 |
| Shannon entropy | 0.61391 |
| G+C content | 0.39808 |
| Mean single sequence MFE | -17.25 |
| Consensus MFE | -9.09 |
| Energy contribution | -9.51 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.20 |
| Mean z-score | -0.63 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.547746 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14488105 92 + 23011544 ------AGUG-GCAACCACUUCACGGAUAUAUAUA-UACCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUC-GCCCGCC--------------- ------.(.(-((..((.......)).........-............((..(((((((((.(((.....))))))))))))..)).......-))))...--------------- ( -17.20, z-score = -1.10, R) >droSim1.chr2L 14235132 90 + 22036055 ------AGUG-GCAACCACUUCACGGAUAUAUAUA---CCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUC-GCCCGCC--------------- ------.(.(-((..((.......)).........---..........((..(((((((((.(((.....))))))))))))..)).......-))))...--------------- ( -17.20, z-score = -1.19, R) >droSec1.super_3 744269 90 + 7220098 ------AGUG-GCAACCACUUCACGGAUAUAUAUA---CCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUC-GCCCGCC--------------- ------.(.(-((..((.......)).........---..........((..(((((((((.(((.....))))))))))))..)).......-))))...--------------- ( -17.20, z-score = -1.19, R) >droYak2.chr2L 14596802 92 + 22324452 ------AGUGUGGAACCACUUCACGGAUAUAUAUA---CCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUUUGCUCGCC--------------- ------...(((((.....)))))(((...((((.---.....)))).((..(((((((((.(((.....))))))))))))..)))))............--------------- ( -15.90, z-score = -0.49, R) >droEre2.scaffold_4929 6242896 91 + 26641161 ------AGUG-GCAACCACUUCACGGAUAUAUAUA---CCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAGUAUUUUUCGCUCCUUUUUGCCCGCC--------------- ------.(.(-((((((.......)).........---..........((..((((((.((.(((.....))))).))))))..))......))))))...--------------- ( -14.70, z-score = 0.04, R) >droAna3.scaffold_12916 14847993 93 - 16180835 ---GGGGCAGGGCACCCACUUCACGGAUGUAUAUA---CCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUCG-CCGGGU---------------- ---((.(.(((((..........(((..((((...---.....))))..)))(((((((((.(((.....))))))))))))..)).))).).-))....---------------- ( -22.60, z-score = -0.22, R) >dp4.chr4_group1 1889494 114 - 5278887 AGUGCCACACAGCACCCACUUUACGGAUAUAUAUA-UACGUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUU-CCUUACGCUCUCCUUCCCUCAU .((((......)))).........(((........-..(((.......((..(((((((((.(((.....))))))))))))..)).......-....))).......)))..... ( -16.70, z-score = -1.29, R) >droPer1.super_5 1828966 114 + 6813705 AGUGCCACACAGCACCCACUUUACGGAUAUAUAUA-UACGUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUU-CCUUACGCUCUCCUUCCCUCAU .((((......)))).........(((........-..(((.......((..(((((((((.(((.....))))))))))))..)).......-....))).......)))..... ( -16.70, z-score = -1.29, R) >droGri2.scaffold_15126 818390 95 + 8399593 ---AGCAGCAAUCACUGUGUGUGUGUGUGUGUUUAGUACUUUCAUAUUGUUGAAGAUAAUGUCAAAUUUAUUGCAUUAUUUU--GCGCUGCUUGCUUUGC---------------- ---((((((....((.(((((...(((((....)).)))...))))).))..(((((((((.(((.....))))))))))))--..))))))........---------------- ( -20.90, z-score = 0.32, R) >droVir3.scaffold_12723 3106362 69 - 5802038 ----------------------------AUGGGUA-UACCUUCAUAUAACCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUU--GCGCAGCGUGUUUUGC---------------- ----------------------------.(((.((-((......)))).)))(((((((((.(((.....))))))))))))--..((((......))))---------------- ( -11.40, z-score = 0.48, R) >droMoj3.scaffold_6500 16422363 86 - 32352404 -----------UGGCGACCUCGAUAGGGUCG--UACUACCUUUAUAUUAACGCAGAUAAUGUCAAAUUUAUUGCAUUAUUUUC-GCGCUGCUUGUUUUGC---------------- -----------..(((((((.....))))))--)................(((((((((((.(((.....)))))))))))..-))).............---------------- ( -19.20, z-score = -1.02, R) >consensus ______AGUG_GCAACCACUUCACGGAUAUAUAUA_UACCUUCAUAUUGCCGGAGAUAAUGUCAAAUUUAUUGCAUUAUUUUUCGCUCCUUUU_GCUCGCC_______________ ................................................((.((((((((((.(((.....))))))))))))).)).............................. ( -9.09 = -9.51 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:26 2011