| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,469,617 – 14,469,759 |
| Length | 142 |
| Max. P | 0.813035 |
| Location | 14,469,617 – 14,469,723 |
|---|---|
| Length | 106 |
| Sequences | 7 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 84.13 |
| Shannon entropy | 0.32156 |
| G+C content | 0.47553 |
| Mean single sequence MFE | -23.73 |
| Consensus MFE | -18.85 |
| Energy contribution | -19.01 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.22 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.30 |
| SVM RNA-class probability | 0.633200 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14469617 106 - 23011544 ACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCAGCUUCUUACCACUCCCUCCAAUUU-CCCUUAUCAGUCGCU ......(((.((((((((....)))).((((...((((..((((((......))))))...))))..))))....................-......))))..))) ( -23.30, z-score = -1.66, R) >droAna3.scaffold_12916 14825143 106 + 16180835 ACUCUUGGCUCUGACAUUAACGAAUGAGAGCCAACAGCGUCUGACAGUCAAAUGUCAGUUAGCUGCAGCUCUUUACCGCUUUCUGC-CCUUGCCCCAGUCUGUGGUC ....((((((((..((((....))))))))))))((((..((((((......))))))...)))).........(((((...(((.-........)))...))))). ( -33.90, z-score = -2.25, R) >droEre2.scaffold_4929 6221926 101 - 26641161 ACUCUUGCCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCAGCUUCUUACCACUGCCUCCAACCUAUCCCUAUCU------ ........................(((((((...((((..((((((......))))))...))))..)).)))))..........................------ ( -19.10, z-score = -1.41, R) >droYak2.chr2L 14576938 106 - 22324452 ACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCAUCUUCUUACCACUCCCUGCAACUU-CCUUUAUCUGUCGCU ....(((((.((..((((....)))))).)))))((((..((((((......))))))...))))...................((.((..-.........)).)). ( -22.00, z-score = -1.03, R) >droSec1.super_3 725718 106 - 7220098 ACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCAGCUUCUUACCACUCCCUCCAAUUU-CCCUUAUCUGUCGCU ....(((((.((..((((....)))))).)))))((((..((((((......))))))...))))..........................-............... ( -20.90, z-score = -0.80, R) >droSim1.chr2L 14215478 106 - 22036055 ACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCAGCUUCUUACCACUCCCUCCAAUUU-CCCUUAUCUGUCGCU ....(((((.((..((((....)))))).)))))((((..((((((......))))))...))))..........................-............... ( -20.90, z-score = -0.80, R) >droMoj3.scaffold_6500 15952765 90 - 32352404 ACUCUUGCUUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCUGUUCUCUGACUCGAGCUGCAGCU----------------- ......(((.((((((((.((...(.(((((.....)).))).)..))..))))))))..))).(((((.(((......)))..))))).----------------- ( -26.00, z-score = -0.58, R) >consensus ACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAUGUCAGUUAGCUGCAGCUUCUUACCACUCCCUCCAACUU_CCCUUAUCUGUCGCU ....(((((.((..((((....)))))).)))))((((..((((((......))))))...)))).......................................... (-18.85 = -19.01 + 0.16)
| Location | 14,469,645 – 14,469,759 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 86.20 |
| Shannon entropy | 0.29476 |
| G+C content | 0.45681 |
| Mean single sequence MFE | -33.76 |
| Consensus MFE | -21.34 |
| Energy contribution | -21.08 |
| Covariance contribution | -0.26 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.77 |
| SVM RNA-class probability | 0.813035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14469645 114 - 23011544 ----UCCUGUCUGGGCUCUUUCGAAAUGCACGCGAGAUUAACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCAGCUUCUU-ACCA ----...((((.((((((....))........(((((.....))))))))).))))........(((((((...((((..((((((...-...))))))...))))..)).))))-)... ( -34.20, z-score = -1.95, R) >droWil1.scaffold_180764 2763595 113 - 3949147 -----CUCCUCUUGACUGUUGUGAAAUGCACGCGAGAUUAACUCUUGCCUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCUGUUCUUUGGCU- -----(((.((((((.(((((((.....)))((((((.....))))))....)))))))).))..)))(((((((((((.((((((...-...)))))).....))))))....)))))- ( -34.00, z-score = -2.11, R) >droPer1.super_5 1798104 120 - 6813705 CUACUCCACUCUUUGUUGUUUUGAAAUGCACGCGAGAUUAACUCUUGCUUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUCAAAAUGUCAGUUAGCUGCAGCUCUUUCACCA ......((.((.(((.((((..(((......((((((.....))))))))).)))).))).)).))(((((...((((..((((((.......))))))...))))..)))))....... ( -30.40, z-score = -1.51, R) >dp4.chr4_group1 1857897 119 + 5278887 CUACUCCACUCUUUGUUGUUUUGAAAUGCACGCGAGAUUAACUCUUGCCUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCAGCUCUUUCACCA ...............(((((....((((((.((((((.....))))))...)).)))))))))..((((((...((((..((((((...-...))))))...))))..))))))...... ( -30.80, z-score = -1.74, R) >droAna3.scaffold_12916 14825171 114 + 16180835 ----GCCUGUCUGCGUUGUUUUGAAAUGCACGCGAGAUUAACUCUUGGCUCUGACAUUAACGAAUGAGAGCCAACAGCGUCUGACAGUC-AAAUGUCAGUUAGCUGCAGCUCUUU-ACCG ----(((.((.((((((.......)))))).))(((.....)))..)))...........((...((((((...((((..((((((...-...))))))...))))..)))))).-..)) ( -36.80, z-score = -2.24, R) >droEre2.scaffold_4929 6221949 118 - 26641161 CCCCUCCUGUCUGGGCUCCUUCGAAAUGCACGCGAGAUUAACUCUUGCCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCAGCUUCUU-ACCA ........(.(((((((((((((.((((((.((((((.....))))))...)).))))..)))).).)))))..((((..((((((...-...))))))...)))))))).....-.... ( -36.30, z-score = -3.24, R) >droYak2.chr2L 14576966 113 - 22324452 ----UCCUGUCUGGGCUCUUACG-AAUGCACGCGAGAUUAACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCAUCUUCUU-ACCA ----...((((.((((.....((-......))(((((.....))))))))).))))........((((((....((((..((((((...-...))))))...))))....)))))-)... ( -32.80, z-score = -2.09, R) >droSec1.super_3 725746 114 - 7220098 ----UCCUGUCUGGGCUCUUUCGAAAUGCACGCGAGAUUAACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCAGCUUCUU-ACCA ----...((((.((((((....))........(((((.....))))))))).))))........(((((((...((((..((((((...-...))))))...))))..)).))))-)... ( -34.20, z-score = -1.95, R) >droSim1.chr2L 14215506 114 - 22036055 ----UCCUGUCUCGGCUCUUUCGAAAUGCACGCGAGAUUAACUCUUGGCCCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCAGCUUCUU-ACCA ----..(((....((((((((((.((((((.((((((.....)))).))..)).))))..)))..)))))))..((((..((((((...-...))))))...)))))))......-.... ( -33.00, z-score = -1.97, R) >droGri2.scaffold_15126 7603608 102 + 8399593 ----GUCUCUCAGAGUUGUUUUGAAAUGCACGCGAGAUUAACUCUUGCUUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUGGCUGC------------- ----(.((((((...(((((....((((((.((((((.....))))))...)).))))))))).)))))).)..((((..((((((...-...))))))...)))).------------- ( -34.00, z-score = -2.51, R) >droMoj3.scaffold_6500 15952777 112 - 32352404 ----GUCGCUCUGA--UGUUUUGAAAUGCACGCGAGAUUAACUCUUGCUUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCUGUUCUCUGACU- ----(((....(((--((((..(((......((((((.....))))))))).)))))))......((((((...((((..((((((...-...))))))...))))..)))))).))).- ( -35.50, z-score = -2.37, R) >droVir3.scaffold_12723 2715079 108 - 5802038 ----GUCUCUCUGA--UGUUUUGAAAUGCACGCGAGAUUAACUCUUGCUUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC-AAAUGUCAGUUAGCUGCUGUUCUCU----- ----...((..(((--((((..(((......((((((.....))))))))).)))))))..))..((((((...((((..((((((...-...))))))...))))..)))))).----- ( -33.10, z-score = -2.31, R) >consensus ____UCCUCUCUGGGCUGUUUUGAAAUGCACGCGAGAUUAACUCUUGCCUCUGACAUUAACGAAUGAGAGCCAACAGCAUCUGACAGUC_AAAUGUCAGUUAGCUGCAGCUCUUU_ACCA ...................((((.((((((.((((((.....))))).)..)).))))..))))...((((...((((..((((((.......))))))...))))..))))........ (-21.34 = -21.08 + -0.26)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:24 2011