| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,455,145 – 14,455,208 |
| Length | 63 |
| Max. P | 0.758321 |
| Location | 14,455,145 – 14,455,208 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 91.90 |
| Shannon entropy | 0.14426 |
| G+C content | 0.47614 |
| Mean single sequence MFE | -8.84 |
| Consensus MFE | -6.60 |
| Energy contribution | -6.80 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.758321 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14455145 63 + 23011544 CCCCUUUUAACCCUUAACACCUCUGCGUCCACUCCAAAAAGUAUGCCUCUUUUUGGUCGUUUG ........................(((......((((((((.......)))))))).)))... ( -8.10, z-score = -2.30, R) >droSim1.chr2L 14203743 63 + 22036055 CCCCUUUUAACCCUUAACACCUCUGCGUCCACUCCAAAAAGUAUGCCUCUUUUUGGUCGUUUG ........................(((......((((((((.......)))))))).)))... ( -8.10, z-score = -2.30, R) >droSec1.super_3 714194 63 + 7220098 CCCCUUUUAACCCUCAACACCUCUGCGUCCACUCCAAAAAGUAUGCCUCUUUUUGGUCGUUUG ........................(((......((((((((.......)))))))).)))... ( -8.10, z-score = -2.29, R) >droYak2.chr2L 14561729 62 + 22324452 -CCCUUUUCACCCUUAACACCUCCUCGGGCACUCCAAAAAGUAUGCCUCUUUUUGGUCGCCUG -........................(((((...((((((((.......))))))))..))))) ( -15.40, z-score = -4.15, R) >droEre2.scaffold_4929 6210398 62 + 26641161 CCCCUUUUAACCCUUAACACCUCGUUGUCCACUCCAAAA-GUAUGCCUCUUUUUGGUCGCUUG ..............((((.....))))..........((-((..(((.......))).)))). ( -4.50, z-score = -0.32, R) >consensus CCCCUUUUAACCCUUAACACCUCUGCGUCCACUCCAAAAAGUAUGCCUCUUUUUGGUCGUUUG .................................((((((((.......))))))))....... ( -6.60 = -6.80 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:18 2011