| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,427,669 – 14,427,725 |
| Length | 56 |
| Max. P | 0.506308 |
| Location | 14,427,669 – 14,427,725 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 56 |
| Reading direction | forward |
| Mean pairwise identity | 95.54 |
| Shannon entropy | 0.07244 |
| G+C content | 0.39456 |
| Mean single sequence MFE | -10.42 |
| Consensus MFE | -9.04 |
| Energy contribution | -9.35 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.506308 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14427669 56 + 23011544 AUAAAAUAUCGUCAGGCGAAAAAGACGCAAGAAAAUGCGUUAAGACAAUUCGCAGC ...............(((((...((((((......)))))).......)))))... ( -11.20, z-score = -1.81, R) >droSim1.chr2L 14175772 56 + 22036055 AUAAAAUAUCGUCAGGCGAAAAAGACGCAAGAAAAUGCGUUAAGACAAUUCGCAGC ...............(((((...((((((......)))))).......)))))... ( -11.20, z-score = -1.81, R) >droSec1.super_3 687045 56 + 7220098 AUAAAAUAUCGUCAGGCGAAAAAGGCGCAAGAAAAUGCGUUAAGACAAUUCGCAGC ...............(((((...((((((......)))))).......)))))... ( -10.70, z-score = -1.18, R) >droEre2.scaffold_4929 6180849 55 + 26641161 AUAAAAUAUGGUCAG-CGAAAAGGACGCAAGAAAAUGCGUUAAGACAAUUCACAGC ..........(((..-(.....)((((((......))))))..))).......... ( -8.60, z-score = -1.51, R) >consensus AUAAAAUAUCGUCAGGCGAAAAAGACGCAAGAAAAUGCGUUAAGACAAUUCGCAGC ...............(((((...((((((......)))))).......)))))... ( -9.04 = -9.35 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:11 2011