| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,422,263 – 14,422,362 |
| Length | 99 |
| Max. P | 0.550256 |
| Location | 14,422,263 – 14,422,362 |
|---|---|
| Length | 99 |
| Sequences | 7 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 75.74 |
| Shannon entropy | 0.44279 |
| G+C content | 0.36985 |
| Mean single sequence MFE | -19.69 |
| Consensus MFE | -9.66 |
| Energy contribution | -10.52 |
| Covariance contribution | 0.86 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.550256 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14422263 99 - 23011544 GCGUCGUAAAAUUCAAUGUUUAUGGG---CAGCCUCUGAUUUUCGGUAUAGUAUAGUAAGUUUGGCUUGAUUUUUUUGUUUUUUUUUUGUUCAAGCUGAACU ((.(((((((........))))))))---).(((..........)))...........((((..((((((....................))))))..)))) ( -19.95, z-score = -1.08, R) >droPer1.super_5 1737455 94 - 6813705 GCGUCGUAAAAUUCAAUGUUUAUGGCUGCUCGCCUCCGAUUCGGUAUACUCCGUAGUAUGUAUAUUUUU--------UUUUAGUUUUUUUUUAAGCUCAACU ((((((((((........)))))))).))..(((........)))(((((....)))))..........--------....(((((......)))))..... ( -12.70, z-score = 0.16, R) >droAna3.scaffold_12916 14782892 83 + 16180835 GCGUCGUAAAAUUCAAAGUUUAUGGC--UCUGCCUCUGAUUCG-------GUAUAGUAUGCCUGGCUUG---------UAUUUUUUUUUUAUAAGCC-AACU ((((((((((........))))))((--(.((((........)-------))).))))))).(((((((---------((.........))))))))-)... ( -20.90, z-score = -2.66, R) >droEre2.scaffold_4929 6175746 79 - 26641161 GCGUCGUAAAAUUCAAUGUUUAUGGC---CAGCCUCUGAAUUUGG-----GUUUAGUAAGUUUGGCUUGA---------------UUUUUUCGAGCUGAACU (.((((((((........))))))))---)(((((........))-----))).....((((..((((((---------------.....))))))..)))) ( -23.20, z-score = -2.70, R) >droYak2.chr2L 14526922 79 - 22324452 GCGUCGUAAAAUCCCAAGUUUAUGGG---CAGCCUCUGAUUUUCG-----GUAUAGUAAGUUUGGCUCGA---------------UUUUUUCAAGCUGAACU ((.(((((((........))))))))---).(((..........)-----))......((((..(((.((---------------.....)).)))..)))) ( -17.50, z-score = -0.68, R) >droSec1.super_3 681789 86 - 7220098 GCGUCGUAAAAUUCAAUGUUUAUGGG---CAGCCUCUGAUUUUCG-----GUAUAGUAAGUUUGGCUUGA--------UUUUAUUUUUUGUCAAGCUGAACU ((.(((((((........))))))))---).(((..........)-----))......((((..((((((--------(..........)))))))..)))) ( -21.80, z-score = -2.29, R) >droSim1.chr2L 14170561 86 - 22036055 GCGUCGUAAAAUUCAAUGUUUAUGGG---CAGCCUCUGAUUUUCG-----GUAUAGUAAGUUUGGCUUGA--------UUUUAUUUUUUGUCAAGCUGAACU ((.(((((((........))))))))---).(((..........)-----))......((((..((((((--------(..........)))))))..)))) ( -21.80, z-score = -2.29, R) >consensus GCGUCGUAAAAUUCAAUGUUUAUGGG___CAGCCUCUGAUUUUCG_____GUAUAGUAAGUUUGGCUUGA________UUUU_UUUUUUUUCAAGCUGAACU ...(((((((........)))))))..................................(((((((((((....................))))))))))). ( -9.66 = -10.52 + 0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:08 2011