| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,412,520 – 14,412,610 |
| Length | 90 |
| Max. P | 0.652749 |
| Location | 14,412,520 – 14,412,610 |
|---|---|
| Length | 90 |
| Sequences | 12 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 74.40 |
| Shannon entropy | 0.51175 |
| G+C content | 0.47765 |
| Mean single sequence MFE | -28.61 |
| Consensus MFE | -16.37 |
| Energy contribution | -15.77 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.652749 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14412520 90 + 23011544 --------------------------GUUUUUUUUUCAUGCUCGUUUGUCGUGGCCUCAAGUGCGCUGGUGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCCAAAG --------------------------.............((.((((..(((((((((((.(((....((..((((....))))..))))))))))).)))))..)))).))..... ( -26.60, z-score = -1.68, R) >droSim1.chr2L 14160194 92 + 22036055 ------------------------GUUUUUUUUUUUCCUGCUCGUUUGUCGUGGCCUCAAGUGCGCUGGUGAGUUCAUAAAUUUGCCCACUGGGCCGUAUGAGUAAUGUGCCAAAG ------------------------...............((.((((..(((((((((..((((....((..((((....))))..)))))))))))..))))..)))).))..... ( -23.70, z-score = -1.18, R) >droSec1.super_3 672031 90 + 7220098 --------------------------GUUUUUUUUUCCUGCUCGUUUGUCGUGGCCUCAAGUGCGCUGGUGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCCAAAG --------------------------.............((.((((..(((((((((((.(((....((..((((....))))..))))))))))).)))))..)))).))..... ( -26.60, z-score = -1.74, R) >droYak2.chr2L 14517060 95 + 22324452 ---------------------GUUUUUGUGUUUUUUUCUGCUCGUUUGUCGUGGCCUCAAGUGCGCUGGUGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCCAAAG ---------------------..................((.((((..(((((((((((.(((....((..((((....))))..))))))))))).)))))..)))).))..... ( -26.60, z-score = -1.56, R) >droEre2.scaffold_4929 6165852 102 + 26641161 --------------GUGUGUAUUUUUUCCUUUUUUUUCAGCUCGUUUGUCGUAGCCUCAAGUGCGCUGGUGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCCAAAG --------------.........................((.((((..(((((((((((.(((....((..((((....))))..))))))))))).)))))..)))).))..... ( -27.10, z-score = -1.78, R) >droAna3.scaffold_12916 14773873 90 - 16180835 --------------------------GCCAUUUUUUCCUGCUCGUUUGUCGUGGCCUCAAGUGCGCCGGCAAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCCAAAG --------------------------.............((.((((..(((((((((((.(((....((((((((....))))))))))))))))).)))))..)))).))..... ( -29.10, z-score = -1.81, R) >dp4.chr4_group1 1779912 115 - 5278887 GUCGUGUGUGCGCUGGCCUUUUUUUU-GCGUUUUCUGCUGCUGGUCGGGGGCCGCCUCAAGUGCGCUGGCAAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCAGAAG ......(.(((((.(((((((..(..-((((.....)).))..)..)))))))((((((.(((....((((((((....)))))))))))))))))...........))))).).. ( -40.10, z-score = -0.16, R) >droPer1.super_5 1723815 116 + 6813705 GUCGUGUGUGCGUUGGCCUUUUUUUUUGCGCUUUCUGCUGCUGGUCGGGGGCCGCCUCAAGUGCGCUGGCAAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCAGAAG ....(.((..(((((((((((......((((.....)).)).....)))))))((((((.(((....((((((((....)))))))))))))))))........))))..)).).. ( -41.50, z-score = -0.63, R) >droWil1.scaffold_180764 2670906 85 + 3949147 -------------------------------GUUUUUCUGCUCAUAUGUCGUCGACUCAAGUGCGCUGGCGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCAAAGA -------------------------------((.....(((((((((((((......).((((....((((((((....))))))))))))..))))))))))))....))..... ( -25.30, z-score = -1.22, R) >droVir3.scaffold_12723 3022920 102 - 5802038 --------------GUGUUAGGUUUUUUUUUUUUUGCCAGCUUUUAUGUCGUUGACUCAAGUGUGCUAGCGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCACGAA --------------((((..............(((((.(((.(((..(((...)))..)))...))).)))))((((((....(((((....)))))))))))......))))... ( -22.70, z-score = 0.25, R) >droMoj3.scaffold_6500 16317640 98 - 32352404 ------------------GCCUUUUUCUCGAUUAUGUAUGUGUGUGUGUAGGUGCCUCGAGUGUGCCGGCGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCAUGAA ------------------.............((((((((((.......((..((((((.((((....((((((((....))))))))))))))))))..))....)))))))))). ( -28.60, z-score = -0.99, R) >droGri2.scaffold_15126 722903 93 + 8399593 ---------------------GUGUGUUUUUUGUU--CAGCUUAUGUGUUGUCGACUCAAGUGCGCUGGCGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCAUGAA ---------------------..............--....(((((..(.....(((((..(((.((((((((((....))))))))....)).)))..)))))...)..))))). ( -25.40, z-score = -0.49, R) >consensus ______________________UUUUUUUUUUUUUUCCUGCUCGUUUGUCGUGGCCUCAAGUGCGCUGGCGAGUUCAUAAAUUUGCCCACUGGGGCGUAUGAGUAAUGUGCAAAAG .......................................................((((..(((.((((((((((....))))))))....)).)))..))))............. (-16.37 = -15.77 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:04 2011