| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,400,696 – 14,400,752 |
| Length | 56 |
| Max. P | 0.521537 |
| Location | 14,400,696 – 14,400,752 |
|---|---|
| Length | 56 |
| Sequences | 5 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 85.46 |
| Shannon entropy | 0.24982 |
| G+C content | 0.53228 |
| Mean single sequence MFE | -17.42 |
| Consensus MFE | -13.82 |
| Energy contribution | -15.14 |
| Covariance contribution | 1.32 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.521537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14400696 56 + 23011544 -GCAUUGGGGCGGUUCGGGGUGCUACACGUUCCGAAAAGUCCUAGAACUAGUUUCUA -...(((((((..(((((..((.....))..)))))..)))))))............ ( -20.80, z-score = -2.69, R) >droSim1.chr2L 14148484 56 + 22036055 -GCAUUGGGGCGGUUCGGGGUGCUACACGUUCCGAAAAGUCCUAGAACUAGUUUCAA -...(((((((..(((((..((.....))..)))))..)))))))............ ( -20.80, z-score = -2.86, R) >droSec1.super_3 660298 54 + 7220098 -GCAUUGGGGCGGUUCGGGAAGU--CACGUUCCGAAAAGUCCUAGAACUAGUCUCAA -...(((((((..(((((((...--....)))))))..)))))))............ ( -18.00, z-score = -2.21, R) >droYak2.chr2L 14505110 56 + 22324452 -GCUGUGAGGCGGUACGGGGUGCUACACGGUCCGAAAAGUCCUAGAACUAGUCUCUA -.....(((((....((((.((.....)).))))...(((......))).))))).. ( -12.70, z-score = 1.06, R) >droEre2.scaffold_4929 6153882 56 + 26641161 GCUUUUGGGGCGGCACGGGGUGCUACACGGUCCGAAAAGUCCUACAAC-AGUUUCAA ((((((.(((((((((...))))).....)))).))))))........-........ ( -14.80, z-score = -0.18, R) >consensus _GCAUUGGGGCGGUUCGGGGUGCUACACGUUCCGAAAAGUCCUAGAACUAGUUUCAA .....((((((..(((((((((.....)))))))))..))))))............. (-13.82 = -15.14 + 1.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:40:00 2011