Locus 1843

Sequence ID dm3.chr2L
Location 14,385,644 – 14,385,747
Length 103
Max. P 0.773442
window2536

overview

Window 6

Location 14,385,644 – 14,385,747
Length 103
Sequences 6
Columns 106
Reading direction reverse
Mean pairwise identity 84.71
Shannon entropy 0.28575
G+C content 0.42218
Mean single sequence MFE -28.17
Consensus MFE -14.94
Energy contribution -15.58
Covariance contribution 0.64
Combinations/Pair 1.27
Mean z-score -2.53
Structure conservation index 0.53
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.65
SVM RNA-class probability 0.773442
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 14385644 103 - 23011544
UAACGAUCGUAUGUCAUCCGGUCAGAUCAUUGCCGGG---AUAUAUGUACGUGCACAUAAACGUGCAUAUAUGAGACAUGUUAUACGACAGACUCUCAACCUUUUA
...((((..((((((.(((((.(((....))))))))---((((((((((((........))))))))))))..))))))..)).))................... ( -31.10, z-score =  -2.67, R)
>droSim1.chr2L 14134073 98 - 22036055
UAACGAUCGUAUGUCAUCCGGCCAGAUCACUGGCGG--------AUAUACGGGCACAUAAACGUGCAUAUAUGAGACAUGUUAUACGACAGACUCUCAACCUUUUA
......(((((((((.....(((((....))))).)--------))))))))((((......)))).....(((((..((((....))))...)))))........ ( -30.20, z-score =  -3.33, R)
>droSec1.super_3 645094 98 - 7220098
UAACGAUCGUAUGUCAUCCGGCCAGAUCACUGGCGG--------AUAUACGGGCACAUAAACGUGCAUAUAUGAGACAUGUUAUACGACAGACUCUCAACCUUUUA
......(((((((((.....(((((....))))).)--------))))))))((((......)))).....(((((..((((....))))...)))))........ ( -30.20, z-score =  -3.33, R)
>droYak2.chr2L 14489645 98 - 22324452
UAACGAUCGCCUGUCAUCCGGCCAGAUCACUGGCGG--------AUAUACGGGUACAUAAACGUGCCUAUAUGAGACAUGUUAUACGACAGACUCUCAACCUUUUA
....((..(.(((((.((((.((((....)))))))--------)((((..(((((......)))))..)))).............))))).)..))......... ( -29.50, z-score =  -2.87, R)
>droEre2.scaffold_4929 6138646 98 - 26641161
UAACGAUCGCCUGUCAUCCGGCCAGAUCACUGGCGG--------AUAUACGGGUACAUAAACGUGCAUAUAUGAGACAAGUUAUACGACAGACUCUCAACCUUUUA
........((((((.(((((.((((....)))))))--------))..)))))).................(((((...(((....)))....)))))........ ( -24.50, z-score =  -1.53, R)
>droPer1.super_5 5131444 106 + 6813705
UAACUAUCGUAUGUCAUCUAUACAGAGUACUCGUAUAGCCGUACAGAUUUUGCAAUAUAUGUGCAUAUAUAUGAGACAUGUUAUACGACAGACUCUCAACCUUUUA
...((.(((((((.(((((....)))((.((((((((...(((((.((........)).)))))...)))))))))).)).))))))).))............... ( -23.50, z-score =  -1.44, R)
>consensus
UAACGAUCGUAUGUCAUCCGGCCAGAUCACUGGCGG________AUAUACGGGCACAUAAACGUGCAUAUAUGAGACAUGUUAUACGACAGACUCUCAACCUUUUA
...((((..((((((..(((.((((....)))))))........(((((...((((......)))).)))))..))))))..)).))................... (-14.94 = -15.58 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:54 2011