| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,316,301 – 14,316,361 |
| Length | 60 |
| Max. P | 0.763938 |
| Location | 14,316,301 – 14,316,361 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 60 |
| Reading direction | forward |
| Mean pairwise identity | 86.12 |
| Shannon entropy | 0.24011 |
| G+C content | 0.40953 |
| Mean single sequence MFE | -9.97 |
| Consensus MFE | -9.13 |
| Energy contribution | -8.63 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.14 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763938 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14316301 60 + 23011544 UUUUUCUAUUAUUUUCCCAAAAAAAAAAAAUACACCCCGUCAUUACCGAGAAGGCGGUGG ................................((((((.((........)).)).)))). ( -9.40, z-score = -0.80, R) >droSim1.chr2L 14061636 51 + 22036055 UUUUUCUAUUAUUUUCCCAAAUA---------CACCCCGUCAUUACCGAGAAGGCGGUGG .......................---------((((((.((........)).)).)))). ( -9.40, z-score = -1.10, R) >droSec1.super_3 576005 51 + 7220098 UUUUUCUAUUAUUUUCCCAAAUA---------CACCCCGUCAUUACCGAGAAGGCGGUGG .......................---------((((((.((........)).)).)))). ( -9.40, z-score = -1.10, R) >droYak2.chr2L 14416761 51 + 22324452 UUUUUCUAUUAUUUUCCCAAAAU---------CACCCCGUCAUUACCGAGAAGGCGGUGG .......................---------((((((.((........)).)).)))). ( -9.00, z-score = -0.82, R) >droEre2.scaffold_4929 15492234 51 - 26641161 UUUUUCUAUUAUUUUCCCAAAUA---------CACCCCGUUAUUACCAGGAUGGCGGUGG .......................---------(((((((((........))))).)))). ( -11.30, z-score = -1.40, R) >droAna3.scaffold_12916 4715505 52 - 16180835 UUUUUCUAUUAUUUUCUCAAAUAC--------CACCCCGCUAUUAUCAAGGAGGAGGUGG .......................(--------((((((.((........)).)).))))) ( -11.30, z-score = -1.61, R) >consensus UUUUUCUAUUAUUUUCCCAAAUA_________CACCCCGUCAUUACCGAGAAGGCGGUGG ................................((((((.((........)).)).)))). ( -9.13 = -8.63 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:50 2011