| Sequence ID | dm3.chr2L |
|---|---|
| Location | 1,296,787 – 1,296,879 |
| Length | 92 |
| Max. P | 0.532482 |
| Location | 1,296,787 – 1,296,879 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 75.00 |
| Shannon entropy | 0.31941 |
| G+C content | 0.39996 |
| Mean single sequence MFE | -17.53 |
| Consensus MFE | -13.61 |
| Energy contribution | -13.83 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.15 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532482 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 1296787 92 - 23011544 AGGCAGGUCUACAUACAUAUUUGUAUUCACUCUCAACGAGUUUUCUAUUACAGAAAGCAGAAUUUACACCUAAGUUGGGAAAUGGGAGUCCU ....(((.....(((((....)))))..(((((((....(((((((.....)))))))..........(((.....)))...)))))))))) ( -19.60, z-score = -0.98, R) >droSec1.super_14 1247082 72 - 2068291 ----------AGGCAGCUAUUUGUAUUCACUCCCAGCGCGUUUUCUAUUUCAGAAAGCGGAAAUUACACCUAACUUGGGAAA---------- ----------..((((....))))......((((((...(((((((.....)))))))((........))....))))))..---------- ( -14.40, z-score = -0.51, R) >droSim1.chr2L 1268854 72 - 22036055 ----------AGGCAGCUAUUUGUAUUCACUCCCAGCGAGUUUUCUAUUUCAGAAAGCGGAAAUUACACCUAAGUUGGGAAA---------- ----------..((((....))))......(((((((..(((((((.....)))))))((........))...)))))))..---------- ( -18.60, z-score = -1.95, R) >consensus __________AGGCAGCUAUUUGUAUUCACUCCCAGCGAGUUUUCUAUUUCAGAAAGCGGAAAUUACACCUAAGUUGGGAAA__________ ..............................(((((((..(((((((.....)))))))((........))...)))))))............ (-13.61 = -13.83 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:08:14 2011