| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,273,162 – 14,273,256 |
| Length | 94 |
| Max. P | 0.814165 |
| Location | 14,273,162 – 14,273,256 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 76.52 |
| Shannon entropy | 0.38457 |
| G+C content | 0.36034 |
| Mean single sequence MFE | -17.98 |
| Consensus MFE | -13.56 |
| Energy contribution | -14.00 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.814165 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14273162 94 + 23011544 UUCAACUGAGUAGAUUUUCAGAUAUCGUUUUUUCUUGGGCCCUUUCCAAAUGAGAACACAAUCUGCUAUUAUUUCAACCUACCAAACGAGCACU ........((((((((....(....)((((((..(((((.....)))))..))))))..))))))))........................... ( -15.30, z-score = -0.93, R) >droSim1.chr2L 14016157 92 + 22036055 UUAAACUGAGUGGAUUUUCUGAUAUCGUGUUCUUUUGAAUCUUUUCUAAAUGAGAACACAAUCUGCUAUUAGUUCAACAGACGGAACG--CACU ........((..((((....(....)((((((((..(((....))).....))))))))))))..))....((((........)))).--.... ( -19.20, z-score = -1.24, R) >droSec1.super_3 532584 92 + 7220098 UUAAACUGAGUAGAUUGUCUGAUAUCGUGUUCUUUUGGGUCUUUUCUAAAUGAGAACACAAUCUGCUAUUAGUUCAACAUACCGAACG--CACU ........((((((((....(....)(((((((((((((.....)))))..))))))))))))))))....((((........)))).--.... ( -22.50, z-score = -2.37, R) >droEre2.scaffold_4929 15448038 80 - 26641161 UCGAACUGAGUAGAUUUUUUUAAAUCGUGUUCAAUUGGACCUUUCCUAAACGAGAACACAAUCUGCUAUUAG---AGAGCACU----------- ((......((((((((..........((((((....(((....))).......)))))))))))))).....---.)).....----------- ( -14.90, z-score = -0.81, R) >consensus UUAAACUGAGUAGAUUUUCUGAUAUCGUGUUCUUUUGGACCUUUUCUAAAUGAGAACACAAUCUGCUAUUAGUUCAACAUACCGAACG__CACU ........((((((((..........(((((((((((((.....)))))..))))))))))))))))........................... (-13.56 = -14.00 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:49 2011