Locus 1836

Sequence ID dm3.chr2L
Location 14,269,122 – 14,269,214
Length 92
Max. P 0.704559
window2526

overview

Window 6

Location 14,269,122 – 14,269,214
Length 92
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 90.61
Shannon entropy 0.18270
G+C content 0.49175
Mean single sequence MFE -29.53
Consensus MFE -23.72
Energy contribution -23.58
Covariance contribution -0.14
Combinations/Pair 1.19
Mean z-score -1.81
Structure conservation index 0.80
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.46
SVM RNA-class probability 0.704559
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 14269122 92 + 23011544
UGGCAGAGAUGAAACGCUU--UUCGUUUCUGGGAAGGGAAAUCCCUGCUUUCUUUUGCCGGAAUCUCU-UCCAAACGGAACUGCGGGGCAAACAC
...(((((((((((....)--))))))))))((.((((....)))).))....((((((((((....)-)))...((......)).))))))... ( -29.20, z-score =  -1.44, R)
>droSim1.chr2L 14012174 92 + 22036055
UGGCAGAGAUGAAACGCUU--UUCGUUUCUGGGAAGGGAAAUCCCUGCUUUCUUUUGCCGGAAUCUCU-UCCAAACGGAACUGCGGGGAAAACAC
...(((((((((((....)--))))))))))..........(((((((.((((.((...((((....)-))).)).))))..)))))))...... ( -29.60, z-score =  -1.70, R)
>droSec1.super_3 526626 92 + 7220098
UGGCAGAGAUGAAACGCUU--UUCGUUUCUGGGAAGGGAAAUCCCUGCUUUCUUUUGCCGGAAUCUCU-UCCAAACGGAACUGCGGGGAAAACAC
...(((((((((((....)--))))))))))..........(((((((.((((.((...((((....)-))).)).))))..)))))))...... ( -29.60, z-score =  -1.70, R)
>droYak2.chr2L 14368839 86 + 22324452
UGGCAGAGAUGAAACGCUU--UUCGUUUCUGGGAA------UCCCUGCUUUCUUUUGCCGGAAUCUCU-UCCAAACGGAACUGCGGGGAAAACAC
...(((((((((((....)--))))))))))....------(((((((.((((.((...((((....)-))).)).))))..)))))))...... ( -29.60, z-score =  -2.82, R)
>droEre2.scaffold_4929 15443956 92 - 26641161
UGGCAGAGAUGAAACGCUU--UUCAUUUCUGGGAAGGGGAAUCCGUGCUUUCUUUUGCCGGAAUCUCU-UCCAAACGGAACUGCGGGGAAAACAC
...(((((((((((....)--))))))))))((((((((..((((.((........)))))).)))))-)))...((......)).......... ( -31.20, z-score =  -2.36, R)
>droAna3.scaffold_12916 4665626 95 - 16180835
GGGCAGAGAUGAAACAUUUCCUCCUUUUCUGGGAAAGGAAGUGUCUGCUUUCUUUUGCCGGAAUCCCUAUCUGAACGGAACCGCGGGCAAAACAC
(((((((.......(((((((((((.....))))..))))))))))))))..(((((((.(..(((..........)))....).)))))))... ( -28.01, z-score =  -0.86, R)
>consensus
UGGCAGAGAUGAAACGCUU__UUCGUUUCUGGGAAGGGAAAUCCCUGCUUUCUUUUGCCGGAAUCUCU_UCCAAACGGAACUGCGGGGAAAACAC
...((((((((((........))))))))))..........(((((((.((((((((..((.....))...)))).))))..)))))))...... (-23.72 = -23.58 +  -0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:45 2011