Locus 1833

Sequence ID dm3.chr2L
Location 14,235,996 – 14,236,112
Length 116
Max. P 0.986209
window2521

overview

Window 1

Location 14,235,996 – 14,236,112
Length 116
Sequences 7
Columns 117
Reading direction forward
Mean pairwise identity 84.53
Shannon entropy 0.30659
G+C content 0.42535
Mean single sequence MFE -30.73
Consensus MFE -18.94
Energy contribution -20.13
Covariance contribution 1.19
Combinations/Pair 1.14
Mean z-score -2.98
Structure conservation index 0.62
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 2.23
SVM RNA-class probability 0.986209
Prediction RNA
WARNING Out of training range. z-scores are NOT reliable.

Download alignment: ClustalW | MAF

>dm3.chr2L 14235996 116 + 23011544
UAUCUUUUGCUUACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAAA-GGCCAAAAGAGUGAGAGA
..(((((..(.................(((.....)))...........(((((((((((.((((((....)))))).......((((.....)))))-)))))))))))..))))) ( -34.60, z-score =  -3.24, R)
>droSim1.chr2L 13979202 115 + 22036055
UAUCUUUCGUUUACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAAA-GGCCAAAAGAGUGAGAG-
...(((((...................(((.....))).........(((((((((((((.((((((....)))))).......((((.....)))))-)))))))))))))))))- ( -33.40, z-score =  -3.25, R)
>droSec1.super_3 493479 115 + 7220098
UAUCUUUCGUUUACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAAAAGACUUUCCACAAGAAAA-GGCCAAAAGAGUGAGAG-
...(((((...................(((.....))).........(((((((((((((.((((((....)))))).......((((.....)))))-)))))))))))))))))- ( -33.40, z-score =  -3.25, R)
>droYak2.chr2L 14334464 113 + 22324452
UAUCUUUCGCUUACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGCCUAGGCCUGCCUUCGGGCCAA-AGACUUUCCACAAGAAAAAGGCCAAGAGUGAGAG---
...(((((((((...............(((.....)))...............(((((((.((((((....))))))..-....((((.....)))).))))))))))))))))--- ( -33.80, z-score =  -3.38, R)
>droEre2.scaffold_4929 15410810 113 - 26641161
UAUCUUUCGCUUGCAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAA-AGACUUUCGACAAGAAAAAGGCCAAGAGUGAGAG---
...(((((((((...........(((..((((((.((.........))))))))..)))..((((((((....)))...-....((((.....)))).)))))..)))))))))--- ( -35.40, z-score =  -3.06, R)
>droAna3.scaffold_12916 4633670 114 - 16180835
UAUCUUUUGCCUACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGCCUAGGCCUGCCUUCGGGCCAAGAGACUUUCCACCAGAAAAAAGCCAAGAGAGAUGG---
..(((((((.((...............(((.....)))...........((((((((((((((....)))..)))))))))))................)).))))))).....--- ( -30.00, z-score =  -2.20, R)
>droWil1.scaffold_180708 1219626 93 + 12563649
UAU-UUUUACCAACUUCAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUU-------GGACGGCCUUUAGGCCA-------UUACAAAAAAAAAACUUCAAACU---------
...-........................((((...((((..............)-------))).((((....)))).-------..............)))).....--------- ( -14.54, z-score =  -2.47, R)
>consensus
UAUCUUUCGCUUACAACAUUUACGACAGGAAGAAAUCCAUCAACACGAUUCUUUUGGUCUAGGCCUGCCUUCGGGCCAA_AGACUUUCCACAAGAAAAAGGCCAAAAGAGAGAG___
...........................(((.....)))............(((((((((..((((((....)))))).......((((.....))))..)))))))))......... (-18.94 = -20.13 +   1.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:41 2011