| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,216,000 – 14,216,109 |
| Length | 109 |
| Max. P | 0.533382 |
| Location | 14,216,000 – 14,216,109 |
|---|---|
| Length | 109 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 82.76 |
| Shannon entropy | 0.31073 |
| G+C content | 0.50350 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -16.20 |
| Energy contribution | -17.09 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.533382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14216000 109 + 23011544 CGCCCACUU--GACGCUUUCCCUCUUUUCCGUUUAAGGCGCCGCCGCCAGUAAGCCCACUAAGUCCAUCAGAAAGUUAAUUUCCAACUGGCUUGUCAGUGGGCCACUAAUA .(((((((.--(((................(((((.((((....))))..))))).....(((.(((...((((.....))))....))))))))))))))))........ ( -30.40, z-score = -2.46, R) >droPer1.super_16 1543630 89 + 1990440 AGACCACUUCUAGGGCUUUCCCUGUUUUCCGUUUAAGGCGGCGCC------AAG----------------CCAAGUUCAUUUCCCACUGGCCCCACAGUGGGCUACUAAUA ..........((((((((..((((((((......))))))).)..------)))----------------))..........(((((((......)))))))...)))... ( -25.20, z-score = -0.69, R) >droEre2.scaffold_4929 15389672 100 - 26641161 CGCCCACUU--GACGCUUUCCCUGCUUUCCGUUUAAGGCACCGCCGCCACUAAG---------UCCAUCAGAAAGUUAUUUUCCAACUGGCUUGUCAGUAGGCUACUAAUA .(((.(((.--(((((.......))...........(((......)))...(((---------.(((...(((((...)))))....)))))))))))).)))........ ( -20.30, z-score = -0.38, R) >droYak2.chr2L 14314372 100 + 22324452 CGCCCACUU--GACGCUUUCCCUGUUUUUCGUUUAAGGCACCGCCGUCACUAAG---------UCCAUCAGAAAGUUAAUUUCCAACUGGCUUGUCAGUGGGCCACUAAUA .(((((((.--(((((((((..((..(((.((....(((...)))...)).)))---------..))...))))))......((....))...))))))))))........ ( -26.80, z-score = -2.39, R) >droSec1.super_3 473623 109 + 7220098 CGCCCACUU--GACGCUUUCCCUCUUUUCCGUUUAAGGCACCGCCGCCACUAAGCCCACUAAGUCCAUCAGAAAGUUAAUUUCCAACUGGCUUGUCAGUGGGCCACUAAUA .(((((((.--(((................(((((.(((......)))..))))).....(((.(((...((((.....))))....))))))))))))))))........ ( -28.40, z-score = -2.49, R) >droSim1.chr2L 13959302 109 + 22036055 CGCCCACUU--GACGCUUUCCCUCUUUUCCGUUUAAGGCACCGCCGCCACUAAGCCCACUAAGUCCAUCAGAAAGUUAAUUUCCAACUGGCUUGUCAGUGGGCCACUAAUA .(((((((.--(((................(((((.(((......)))..))))).....(((.(((...((((.....))))....))))))))))))))))........ ( -28.40, z-score = -2.49, R) >consensus CGCCCACUU__GACGCUUUCCCUCUUUUCCGUUUAAGGCACCGCCGCCACUAAG_________UCCAUCAGAAAGUUAAUUUCCAACUGGCUUGUCAGUGGGCCACUAAUA .(((((((...((((((((...............)))))...(((..................((.....)).((((.......)))))))..))))))))))........ (-16.20 = -17.09 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:37 2011