| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,196,421 – 14,196,511 |
| Length | 90 |
| Max. P | 0.607643 |
| Location | 14,196,421 – 14,196,511 |
|---|---|
| Length | 90 |
| Sequences | 8 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 76.92 |
| Shannon entropy | 0.46847 |
| G+C content | 0.41793 |
| Mean single sequence MFE | -15.84 |
| Consensus MFE | -8.95 |
| Energy contribution | -8.55 |
| Covariance contribution | -0.40 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.607643 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14196421 90 + 23011544 UCGUCCUUUUACCCAUUUUGU---AACCAAGUGA-ACAGGUAAUUGAAAAUGUUCCCAUGUGGCAACUGCCACACUCUAAAA--CCCCAUUGACCC ..((((..((((((((((...---....))))).-...)))))..)............((((((....))))))........--.......))).. ( -16.10, z-score = -1.13, R) >droSim1.chr2L 13939828 93 + 22036055 UCGUCCUUUUACCCAUUUUGUUGUAACCAAGUGA-ACAGGUAAUUGAAAAUUUUCCCAUGUGGCAACAGCCACACUCUAAAA--CCCCAUUGACCC ..((((..((((((((((.((....)).))))).-...)))))..)............((((((....))))))........--.......))).. ( -17.40, z-score = -1.38, R) >droSec1.super_3 454147 93 + 7220098 UCGUCCUUUUACCCAUUUUGUUGUAACCAAGUGA-ACAGGUAAUUGAAAAUUUUCCCAUGUGGCAACAGCCACACUCUAAAA--CCCCAUUGACCC ..((((..((((((((((.((....)).))))).-...)))))..)............((((((....))))))........--.......))).. ( -17.40, z-score = -1.38, R) >droYak2.chr2L 14294451 90 + 22324452 UCGUCCUUUUUCCCAUUUAGU---AACCAAGUGA-ACAGGUAAUUGAAAAUUUUCCCAUGUGGCAACCGCCACACUCUAAAA--CCCCAUUGACCC ..(((..........((((((---.(((..(...-.).))).))))))..........((((((....))))))........--.......))).. ( -16.20, z-score = -1.94, R) >droEre2.scaffold_4929 15370090 90 - 26641161 UCGUCCUUUUACCCAUUUUGU---AACCAAGUGA-ACAGGUAAUUGAAAACUUUCCCAUGUGGCAACUGCCACACUCUAAAA--CCCCAUUGACCC ..((((..((((((((((...---....))))).-...)))))..)............((((((....))))))........--.......))).. ( -16.10, z-score = -1.52, R) >droAna3.scaffold_12916 4592196 70 - 16180835 --------------------UCAAAACUAAGUAA-GU-GGUAAUUGAAAAUUUUCCCAUGUGGCAACAG--GCACUCUAAAA--ACCUAUUGACCC --------------------((((.((((.....-.)-)))..))))..............(((((.((--(..........--.))).))).)). ( -6.90, z-score = 1.31, R) >dp4.chr4_group4 1155553 96 - 6586962 AUUUCUCUUUUUGCAUUUACAACCAACUGAAAAGCAAAAGUAAUUGAGAAUUUUCCCAUGUGGCAAACGCCGCACUCUAGAGUCCCCCAUUGACCC ..((((((((((((.(((.((......))))).))))))).....)))))........((((((....)))))).......(((.......))).. ( -18.30, z-score = -1.96, R) >droPer1.super_16 1519749 96 + 1990440 AUUUCUCUUUUUGCAUUUACAACCAACUGAAAAGCAAAAGUAAUUGAGAAUUUUCCCAUGUGGCAAACGCCGCACUCUAGAGUCCCCCAUUGACCC ..((((((((((((.(((.((......))))).))))))).....)))))........((((((....)))))).......(((.......))).. ( -18.30, z-score = -1.96, R) >consensus UCGUCCUUUUACCCAUUUUGU___AACCAAGUGA_ACAGGUAAUUGAAAAUUUUCCCAUGUGGCAACAGCCACACUCUAAAA__CCCCAUUGACCC .........................(((..........))).................((((((....))))))...................... ( -8.95 = -8.55 + -0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:35 2011