| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,194,320 – 14,194,417 |
| Length | 97 |
| Max. P | 0.545269 |
| Location | 14,194,320 – 14,194,417 |
|---|---|
| Length | 97 |
| Sequences | 9 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 74.55 |
| Shannon entropy | 0.53823 |
| G+C content | 0.38442 |
| Mean single sequence MFE | -21.92 |
| Consensus MFE | -10.58 |
| Energy contribution | -10.54 |
| Covariance contribution | -0.03 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545269 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14194320 97 + 23011544 -UCCAAACAAGAAAUGGCAACGAAAAACAAUUUUGCGGCUAAUUAGUCGCAGAGCAAAUAAUUAAUUAAAUUUGUUUAGCUGCCUUCGAGUGGGCUAA -((((.....(((..((((............(((((((((....)))))))))((((((((..........)))))).)))))))))...)))).... ( -23.80, z-score = -1.86, R) >droSim1.chr2L 13937677 97 + 22036055 -UCCAAGCAAGAAACGGCAACGAAAAACAAUUUUGCGGCUAAUUAGUCGCAGAGCAAAUAAUUAAUUAAAUUUGUGUAGCUGCCUUCGAGUGGGCUAA -....(((......((....))....((...(((((((((....)))))))))((((((..........)))))))).)))((((......))))... ( -25.10, z-score = -1.56, R) >droSec1.super_3 452009 97 + 7220098 -UCCAAGCAAGAAACGGCAACGAAAAUCAAUUUUGCGGCUAAUUAGUCGCAGAGCAAAUAAUUAAUUAAAUUUGUGUAGCUGCCUUCGAGUGGGCUAA -....(((......((....)).........(((((((((....)))))))))((((((..........))))))...)))((((......))))... ( -24.90, z-score = -1.49, R) >droYak2.chr2L 14292324 97 + 22324452 -UCCAAGCGGGAAACGGCACCGAAAACCAAUUUUGCGGCUAAUUAGUCGCACAGCAAAUAAUUAAUUAAAUUUGUGUAGCUGCCUUGGAGUGGGCUAA -((((.((.(....).))........((((...(((((((....)))))))((((..((((..........))))...))))..))))..)))).... ( -26.40, z-score = -0.85, R) >droEre2.scaffold_4929 15367942 95 - 26641161 -UCCAAGCAAGAAACAGCACCGAAAACCAAUUAUGUGGCUAAUUAGUCGCAGAGCAAAUAAUUGAUUAAAUUUGUGUGGCUGCCU-GGAGUGC-CUAA -((((.(((.(..((..................(((((((....)))))))..((((((..........))))))))..)))).)-)))....-.... ( -20.00, z-score = -0.01, R) >droAna3.scaffold_12916 4590258 93 - 16180835 -UCCAAGC----AACAGAAACGGAAAACAAUUUUGCGGCUAAUUAGUCGCAGAGUAAAUAAUUAAUUAACUUUGGGUAUCUACUUGAAAGGGGCCUAC -.....((----..(..............(((((((((((....)))))))))))...............((..(((....)))..)).)..)).... ( -20.00, z-score = -1.54, R) >dp4.chr4_group4 1153288 91 - 6586962 -UCGAAGAAACAAACAAAAAC----AGCGAUUUUGCGGCUAAUUAGUCGCAGGGCAAAUAAUUAAUUAAAUUUCCGUCCGGGGGAUGGAUGAUGUU-- -.................(((----(((...(((((((((....))))))))))).................(((((((...)))))))...))))-- ( -21.40, z-score = -1.52, R) >droPer1.super_16 1517515 91 + 1990440 -UCGAAGAAACAAACAAAAAC----AGCGAUUUUGCGGCUAAUUAGUCGCAGGGCAAAUAAUUAAUUAAAUUUCCGUCCGGGGGAUGGAUGAUGUU-- -.................(((----(((...(((((((((....))))))))))).................(((((((...)))))))...))))-- ( -21.40, z-score = -1.52, R) >droWil1.scaffold_180708 11284101 92 - 12563649 CUUGAAAAAAAAGGAACACAGUAAAAACAAUUUUGCAGCUAAUUAGCCGCAGAGCAAAUAAUUAAUUAACUUUUUUUACAAAGUUGGCCAAG------ .(((.((((((((.......((....))..((((((.(((....))).))))))...............)))))))).)))...........------ ( -14.30, z-score = -0.53, R) >consensus _UCCAAGCAAGAAACAGCAACGAAAAACAAUUUUGCGGCUAAUUAGUCGCAGAGCAAAUAAUUAAUUAAAUUUGUGUAGCUGCCUUGGAGUGGGCUAA ..............................((((((((((....))))))))))............................................ (-10.58 = -10.54 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:34 2011