| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,146,572 – 14,146,664 |
| Length | 92 |
| Max. P | 0.952695 |
| Location | 14,146,572 – 14,146,664 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 97.09 |
| Shannon entropy | 0.03993 |
| G+C content | 0.43801 |
| Mean single sequence MFE | -20.73 |
| Consensus MFE | -20.64 |
| Energy contribution | -20.20 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.75 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.59 |
| SVM RNA-class probability | 0.952695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14146572 92 + 23011544 UAAAGGACGCCCAUUUUUAUGAAAAAUAUCACCAGCAAAAAAAAGGGAUAUUCGUAAGACCCAAGGGGAAGGCGUGGCGCAAAGAGGAAAAC ......(((((...((((((((...(((((.((...........)))))))))))))))(((...)))..)))))................. ( -19.70, z-score = -1.47, R) >droEre2.scaffold_4929 15318630 91 - 26641161 UAAAGGACGCCCAUUUUUACGAAAAAUAUCACCAGCAAAAAAA-GGGAUAUUCGUAAGACCCAAGGGGAAGGCGUGGCGCAAAGAGGAAAAC ......(((((...((((((((...(((((.((..........-)))))))))))))))(((...)))..)))))................. ( -21.60, z-score = -2.13, R) >droYak2.chr2L 14244246 91 + 22324452 UAAAGGACGCCCAUUUUUACGGAAAAUAUCACCAGCAAAAAAA-GGGAUAUUCGUAAGACCCAAGGGGAAGGCGUGGCGCAAAGAGGAAUAC ......(((((...(((((((((...((((.((..........-)))))))))))))))(((...)))..)))))................. ( -20.90, z-score = -1.65, R) >consensus UAAAGGACGCCCAUUUUUACGAAAAAUAUCACCAGCAAAAAAA_GGGAUAUUCGUAAGACCCAAGGGGAAGGCGUGGCGCAAAGAGGAAAAC ......(((((...((((((((...(((((.((...........)))))))))))))))(((...)))..)))))................. (-20.64 = -20.20 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:27 2011