| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,144,792 – 14,144,904 |
| Length | 112 |
| Max. P | 0.619179 |
| Location | 14,144,792 – 14,144,904 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 76.55 |
| Shannon entropy | 0.45121 |
| G+C content | 0.39494 |
| Mean single sequence MFE | -27.34 |
| Consensus MFE | -17.58 |
| Energy contribution | -14.98 |
| Covariance contribution | -2.60 |
| Combinations/Pair | 1.70 |
| Mean z-score | -1.10 |
| Structure conservation index | 0.64 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.619179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14144792 112 + 23011544 UUUUUAAGAGGUCUCGACUCCUUUUGGAGUUACUGAAAUUAUAAAUAAGUAGAUCUGUCUCAGUUCGGGCUUCAUUUUUUUGUUUGCCAGCCGGCGAGUUGGUUGUUAAGGA .......(((((((.((((((....))))))(((((.((.................)).)))))..)))))))...((((((...((((((......))))))...)))))) ( -27.23, z-score = -0.57, R) >droEre2.scaffold_4929 15316932 112 - 26641161 UAUUAAAGCGGUCUCGACUCCUUUUGGAGUCACUGAAAUUAUAAAUAAGUAGAUCUGUCUCUGUUUAGGCUACACUUUUUUGCUUGCCAGCCGGCGAGUUGGUUGUUAAGGA ......((((..(..((((((....)))))).................((((.((((........))))))))........(((((((....))))))).)..))))..... ( -30.10, z-score = -1.14, R) >droYak2.chr2L 14242483 112 + 22324452 UGUUAAAGAGGUCCCGACUCCUUUUGGAGUCACUGAAAUUAUAAAUAAGUAGAUCUGUCUCAGUUCAGGCUACACUUUUUUGUUCGCCAGCCGGCGAGUUGAUUGUUAAGGA ...(((((((((...((((((....)))))).................((((.((((........)))))))))))))))))((((((....)))))).............. ( -32.10, z-score = -1.87, R) >droSec1.super_3 402941 112 + 7220098 UGUUAAAAAGGUCUCGACUCCUUUUGGAGUCACUGAAAUUAUAAAUAAGUAGAUCUGUCUCAGUUCGGGCUUCAUUUUUAUGUUUGCCAGCCGGCGAGUUGGUUGUUAAGGA ........((((((.((((((....))))))(((.............)))))))))...........(((..(((....)))...)))((((((....))))))........ ( -26.02, z-score = -0.32, R) >droSim1.chr2L 13894924 112 + 22036055 UGUUAAAAAGGUCUCGACUCCUUUUGGAGUCACUGAAAUUAUAAAUAAGUAGAUCUGUCUCAGUUCGGGCUUCAUUUUUAUGUUUGCCAGCCGGCGAGUUGGUUGUUAAGGA ........((((((.((((((....))))))(((.............)))))))))...........(((..(((....)))...)))((((((....))))))........ ( -26.02, z-score = -0.32, R) >droWil1.scaffold_180708 1342318 105 + 12563649 AACUGAAAUUGUGUUUGUUCCUUU--AAUUGACGUGGUUUCUUAAUUAUUUUUUGUAGAUUUGCUACCGCAAGGUUUCAUUUCUCGUUACUAGCCGAUUUCAA-GCCA---- ...((((((((.(((.((..(..(--((((((.(......))))))))......(.(((..((..(((....)))..))..)))))..)).))))))))))).-....---- ( -22.60, z-score = -2.37, R) >consensus UGUUAAAAAGGUCUCGACUCCUUUUGGAGUCACUGAAAUUAUAAAUAAGUAGAUCUGUCUCAGUUCGGGCUACAUUUUUUUGUUUGCCAGCCGGCGAGUUGGUUGUUAAGGA ....(((((((((..((((((....))))))..((((..........((.....)).......)))))))))..))))....((((((....)))))).............. (-17.58 = -14.98 + -2.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:27 2011