| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,140,130 – 14,140,242 |
| Length | 112 |
| Max. P | 0.815824 |
| Location | 14,140,130 – 14,140,242 |
|---|---|
| Length | 112 |
| Sequences | 9 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 76.88 |
| Shannon entropy | 0.46213 |
| G+C content | 0.53176 |
| Mean single sequence MFE | -39.00 |
| Consensus MFE | -14.29 |
| Energy contribution | -15.04 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.41 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.815824 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14140130 112 - 23011544 AGUCUUUGGACUUUGGGCUGGGUGUCGCCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGCGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGAAGUUGGGCAAAG .((((...((((((.(((..((..(((((((.......((.((.(((((....))))).)).))..(((((....))))))))))))...))..))).)))))))))).... ( -46.70, z-score = -3.25, R) >droPer1.super_16 1444001 105 - 1990440 -------GGGUCUUGGAUUGGGUGUCGCUCGAAAGCACGAGAAGAUGAAUCGUUUCGUUUUGGCGUUUUGAGCACUCGAGUGGGCGAAGUCGUGGGGAGGACUUGGCUAAAG -------((((....(((.....)))(((((((...(((..((((((((....))))))))..)))))))))))))).....(((.(((((.(....).))))).))).... ( -32.50, z-score = -0.71, R) >droAna3.scaffold_12916 4538545 100 + 16180835 ------------GGGGAAUGGGUCUCGGCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGUGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGGACUUGGCCAAAG ------------......((((((((((((((..(.((((((.......)))))))...)))))....)))).)))))....(((.(((((((....))))))).))).... ( -35.90, z-score = -1.51, R) >droEre2.scaffold_4929 15312258 111 + 26641161 -GACUUUGGACUUUGGGCUGGGUGUCGCCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGCGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGAAGUUGGGCAAAG -..(((((((((((.(((..((..(((((((.......((.((.(((((....))))).)).))..(((((....))))))))))))...))..))).))))))...))))) ( -45.70, z-score = -2.99, R) >droYak2.chr2L 14237699 111 - 22324452 -GACUUUGGACUUUGGGCUGGGUGUCGCCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGCGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGAAGUUGGGCAAAG -..(((((((((((.(((..((..(((((((.......((.((.(((((....))))).)).))..(((((....))))))))))))...))..))).))))))...))))) ( -45.70, z-score = -2.99, R) >droSec1.super_3 398318 105 - 7220098 -------AGACUUUGGGCUGGGUGUCGCCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGCGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGAAGUUGGGCAAAG -------.((((((.(((..((..(((((((.......((.((.(((((....))))).)).))..(((((....))))))))))))...))..))).))))))........ ( -43.40, z-score = -3.06, R) >droSim1.chr2L 13890301 105 - 22036055 -------AGACUUUGGGCUGGGUGUCGCCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGCGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGAAGUUGGGCAAAG -------.((((((.(((..((..(((((((.......((.((.(((((....))))).)).))..(((((....))))))))))))...))..))).))))))........ ( -43.40, z-score = -3.06, R) >droVir3.scaffold_12723 1276918 88 - 5802038 --------------GGCUGGGUUUGGGAUUGAAAGCACAAGAAGAUGAAUCGUUUUGUGUUGGCGUUUUGAGCAUUCGAGUGGGCGACCAUUAGGUGGG--CAG-------- --------------.(((.((((..((((.(..(((((((((.((....)).)))))))))..)))))..)))..((.(((((....))))).))).))--)..-------- ( -27.00, z-score = -2.31, R) >droMoj3.scaffold_6500 22248812 98 + 32352404 --------------GGCUCGGUUUGGGAUUGAAAGCACAAGAAGAUGAAUCGUUUUGUGUUGGCGUUUUGAGCAUUCGAGUGGGCGACCAUUAGUUGGAGUCGGAGGCAGAG --------------(((((.(((..((((.(..(((((((((.((....)).)))))))))..)))))..))).....(((((....))))).....))))).......... ( -30.70, z-score = -2.30, R) >consensus _______GGACUUUGGGCUGGGUGUCGCCCGAAAGCAAGCGAAGAUGAAUCGUUUCGUGUUGGCGUUUUGAGCACUCAAGUGGGCGAAGUCCUGGCCAGAAGUUGGGCAAAG ..........................((((((......((.(.(((...((((((..((...((.......))...))...)))))).))).).))......)))))).... (-14.29 = -15.04 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:26 2011