| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,135,040 – 14,135,146 |
| Length | 106 |
| Max. P | 0.951168 |
| Location | 14,135,040 – 14,135,146 |
|---|---|
| Length | 106 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.81 |
| Shannon entropy | 0.14692 |
| G+C content | 0.60034 |
| Mean single sequence MFE | -35.18 |
| Consensus MFE | -32.23 |
| Energy contribution | -32.40 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.99 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.57 |
| SVM RNA-class probability | 0.951168 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14135040 106 - 23011544 --------------UCCAAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCCCCACCGCCACCGGUUGCCG --------------...................(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. ( -33.60, z-score = -1.88, R) >droSim1.chr2L 13885286 106 - 22036055 --------------UCCAAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCCCCACCGCCACCGGUUGCCG --------------...................(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. ( -33.60, z-score = -1.88, R) >droSec1.super_3 393289 106 - 7220098 --------------UCCAAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCCCCACCGCCACCGGUUGCCG --------------...................(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. ( -33.60, z-score = -1.88, R) >droYak2.chr2L 14232465 106 - 22324452 --------------UCCAAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUCUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCCCCACCGCCACCGGUUGCCG --------------...................(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. ( -33.60, z-score = -1.84, R) >droEre2.scaffold_4929 15307154 106 + 26641161 --------------UCCAAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCCCCACCGCCACCGGUUGCCG --------------...................(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. ( -33.60, z-score = -1.88, R) >droAna3.scaffold_12916 4533729 120 + 16180835 UCUAAUCUGGCUCCUCCGCACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG ........(((....((((((.......))))((((.......(((...((.....)).))).......))))((((((((((.....(....).....))))))))))...))..))). ( -41.64, z-score = -2.49, R) >dp4.chr4_group4 1078439 103 + 6586962 -----------------AAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGUGCCUCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG -----------------................(((..((((.(((...((.....)).)))......(((.((((((.(((((........))))).)))))).)))...))))))).. ( -35.70, z-score = -2.12, R) >droPer1.super_16 1438851 103 - 1990440 -----------------AAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGUGCCUCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG -----------------................(((..((((.(((...((.....)).)))......(((.((((((.(((((........))))).)))))).)))...))))))).. ( -35.70, z-score = -2.12, R) >droWil1.scaffold_180708 11209972 105 + 12563649 ---------------CAACACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUCUUUGUGCUGGUGGUGGCACCUCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG ---------------...(((.......)))..(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. ( -34.60, z-score = -1.88, R) >droVir3.scaffold_12723 1270637 106 - 5802038 --------------AUCGAACUCACCUUGUGCAGCAACACCGAUGCUUUUCUUUUAGAUGCCAUUUUUGUGCUGGUGGUGGCACCUCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG --------------.............((.((((((.......)))...((.....))))))).....((((((((((.(....).))))))))))....((.((((....)))).)).. ( -30.70, z-score = -1.24, R) >droMoj3.scaffold_6500 22241203 106 + 32352404 --------------UCUGAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAAGCCAUCUUUGUGCUGGUGGUGGCACCGCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG --------------.(((.((.......)).))).......(((((((((.....))))))).))...((((((((((((....))))))))))))....((.((((....)))).)).. ( -40.90, z-score = -3.04, R) >droGri2.scaffold_15252 4661375 106 - 17193109 --------------GCUGAACUCACCUUGUGCAGCAACACCGAUGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCACCUCCGCCAGCACCGCCGCCACCGCCACCGGUUGCCG --------------((((.((.......)).)))).........((..........((........))((((((((((.(....).)))))))))).)).((.((((....)))).)).. ( -34.90, z-score = -1.66, R) >consensus ______________UCCAAACUCACCUUGUGCAGCAACACCGAGGCUUUUCUUUUAGAUGCCAUUUUCGUGCUGGUGGUGGCGCCUCCGCCAGCACCUCCGCCACCGCCACCGGUUGCCG .................................(((..((((.(((...((.....)).)))......((((((((((.(....).))))))))))...............))))))).. (-32.23 = -32.40 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:25 2011