| Sequence ID | dm3.chr2L |
|---|---|
| Location | 14,094,833 – 14,094,942 |
| Length | 109 |
| Max. P | 0.928038 |
| Location | 14,094,833 – 14,094,942 |
|---|---|
| Length | 109 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.83 |
| Shannon entropy | 0.40876 |
| G+C content | 0.40466 |
| Mean single sequence MFE | -26.60 |
| Consensus MFE | -14.20 |
| Energy contribution | -14.08 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.33 |
| SVM RNA-class probability | 0.928038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 14094833 109 - 23011544 -----------GACUGAAAUUUAAAUUCAAAUUUGAAUUCUCGUUCCAUUCCAAUAUUCCGCAAGCCACUGCUUAGCACUGAUAUCAGUGUUGGCUAGCACGAAAAUACUCAGGCGACUU -----------..(((((((((((((....))))))))).....................((.(((((.......((((((....))))))))))).))..........))))....... ( -24.01, z-score = -1.84, R) >droSim1.chr2L 13849061 109 - 22036055 ---CAGUUACCGACUGAAAUUUAAAUUCAAAUUUGAAUUCUCGUUCC--------AUUCCCCAUGCUACUCUAUAGCACUGGUAUCAGUGUUGGCUAGCACGAAAAUACACAGGCGACUU ---.(((..((((.((((((((((((....))))))))).))).)).--------........(((((.....((((((((....))))))))..)))))............))..))). ( -24.60, z-score = -1.99, R) >droSec1.super_3 352809 109 - 7220098 ---CAGUUACCGACUGAAAUUUAAAUUCAAAUUUGAAUUCUCGUUCC--------AUUCCCCAUGCUACUCCAUAGCACUGGUAUCAGUGUUGGCUAGCACGAAAAUACACAGGCGACUU ---.(((..((((.((((((((((((....))))))))).))).)).--------........(((((..(((..((((((....))))))))).)))))............))..))). ( -25.60, z-score = -2.34, R) >droYak2.chr2L 14189431 114 - 22324452 ---CAGUUAAUGGCUUAAAUUUAAAUUUAAAUUUGAAUUCUCGUUCCAUUCCCCUAUUCCGCAUUUCGCUAUUCAACACUGGUGCCAGUGUUGGCGAGCACGGAAACACACAGGCUU--- ---.(((((((((....(((((((((....)))))))))......)))))......(((((...(((((....((((((((....)))))))))))))..))))).......)))).--- ( -29.50, z-score = -2.52, R) >droEre2.scaffold_4929 15266608 120 + 26641161 UUCUCGUUAGCGCCUAAAUUUUAAAUUCAAAUUUGAAUUUUCGUUCCAUUUCCCUGUUCCACAUUUCACUAGUUAACACUGGUGCUAGUGUUGGCUAGCACGAAGCUACACAGGCGACUU ........(((((((........((((((....))))))(((((..........((.....)).....(((((((((((((....))))))))))))).))))).......))))).)). ( -29.30, z-score = -2.66, R) >consensus ___CAGUUACCGACUGAAAUUUAAAUUCAAAUUUGAAUUCUCGUUCCAUU_C__UAUUCCCCAUGCCACUACUUAGCACUGGUAUCAGUGUUGGCUAGCACGAAAAUACACAGGCGACUU ...........(.(((.(((((((((....))))))))).((((.............................((((((((....))))))))(....))))).......))).)..... (-14.20 = -14.08 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:39:20 2011